CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18105	Canola	nucleus	98.73	98.73
CDX77493	Canola	cytosol	92.72	93.02
CDX85117	Canola	nucleus	91.46	91.75
AT3G23620.1	Thale cress	cytosol	82.91	83.44
CDX95401	Canola	cytosol	26.9	74.56
KRH32652	Soybean	nucleus	69.3	69.75
KRH20030	Soybean	nucleus	68.04	68.47
VIT_08s0007g03890.t01	Wine grape	nucleus	68.04	68.25
PGSC0003DMT400072406	Potato	cytosol	67.41	67.19
Solyc10g083600.1.1	Tomato	nucleus	67.41	63.2
Os01t0513800-01	Rice	nucleus	61.71	62.9
Zm00001d018141_P001	Maize	mitochondrion	61.08	62.46
Zm00001d038646_P002	Maize	mitochondrion	60.76	62.14
EES19780	Sorghum	mitochondrion	60.76	61.94
TraesCS5B01G208800.1	Wheat	mitochondrion	59.49	60.45
TraesCS5A01G215000.1	Wheat	nucleus	59.81	60.38
TraesCS5D01G217000.1	Wheat	mitochondrion	59.81	60.38
TraesCS5D01G426000.1	Wheat	mitochondrion	59.81	60.0
HORVU5Hr1G061870.1	Barley	nucleus	59.49	59.87
Os05t0506900-01	Rice	nucleus	20.89	59.46
GSMUA_Achr11P...	Banana	mitochondrion	62.34	58.28
CDY33857	Canola	cytosol, mitochondrion, nucleus	21.84	56.56
GSMUA_Achr5P20210_001	Banana	nucleus	63.92	52.2
TraesCS2D01G079000.1	Wheat	nucleus	8.86	42.42
TraesCS2A01G080900.1	Wheat	nucleus	8.54	40.91
TraesCS2D01G059200.1	Wheat	cytosol	7.59	36.36
HORVU2Hr1G013300.6	Barley	cytosol	11.71	31.09

Protein Annotations

EnsemblPlants:CDY50460	EnsemblPlantsGene:GSBRNA2T00096756001	InterPro:Brix	InterPro:IPR007109	PANTHER:PTHR12728	PFAM:PF04427
PFscan:PS50833	ProteinID:CDY50460	ProteinID:CDY50460.1	SEG:seg	SMART:SM00879	UniParc:UPI0004EE2998
UniProt:A0A078IHL9	MapMan:17.1.2.2.1.11.1	:	:	:	:

Description

BnaCnng19390DBnaCnng19390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHL9]

Coordinates

chrLK032913:-:59389..61417

Molecular Weight (calculated)

35866.8 Da

IEP (calculated)

10.530

GRAVY (calculated)

-0.704

Length

316 amino acids

Sequence
(BLAST)

001: MMEIRTPKTH KAKRVLEKRA PKLVENGKRT LILHGTKTSA TLSSVLMELY RLKKGGAIKY SRRNENIRPF ESGGETSLEF FSQKTDCSIF AYGSHTKKRP
101: DNLVLGRMYD HHVYDLIEVG IENFKSLLSF SYDKKIAPHE GSKPFICFTG EGFENVPELK QLKEVLTDLF RGEVVDNLNL TGLDRAYICS AVSPTKVFLT
201: HCAIKLKKSG TIVPRIELVE VGPSMDLVIR RNRLPNEGLR KEAMKSSKDK PKKKVKNVDQ DDVLGKRGRI FIPEQEVGKT PLPDKSKGVK RERREGKLKK
301: KNKEEGSASK KHKKSE

Best Arabidopsis Sequence Match ( AT3G23620.1 )
(BLAST)

001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE

Arabidopsis Description

Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.