Factsheet for Os05t0506900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95401	Canola	cytosol	53.15	51.75
CDY33857	Canola	cytosol, mitochondrion, nucleus	43.24	39.34
Os01t0513800-01	Rice	nucleus	80.18	28.71
TraesCS5B01G208800.1	Wheat	mitochondrion	74.77	26.69
TraesCS5D01G217000.1	Wheat	mitochondrion	74.77	26.52
TraesCS5A01G215000.1	Wheat	nucleus	74.77	26.52
EES19780	Sorghum	mitochondrion	73.87	26.45
TraesCS5D01G426000.1	Wheat	mitochondrion	73.87	26.03
Zm00001d038646_P002	Maize	mitochondrion	72.07	25.89
Zm00001d018141_P001	Maize	mitochondrion	72.07	25.89
HORVU5Hr1G061870.1	Barley	nucleus	72.07	25.48
VIT_08s0007g03890.t01	Wine grape	nucleus	64.86	22.86
GSMUA_Achr11P...	Banana	mitochondrion	69.37	22.78
PGSC0003DMT400072406	Potato	cytosol	62.16	21.77
KRH20030	Soybean	nucleus	61.26	21.66
KRH32652	Soybean	nucleus	61.26	21.66
CDX85117	Canola	nucleus	61.26	21.59
CDX77493	Canola	cytosol	61.26	21.59
Bra014967.1-P	Field mustard	cytosol	61.26	21.59
AT3G23620.1	Thale cress	cytosol	60.36	21.34
CDY18105	Canola	nucleus	60.36	21.2
Bra028325.1-P	Field mustard	nucleus	60.36	21.2
CDY50460	Canola	nucleus	59.46	20.89
Solyc10g083600.1.1	Tomato	nucleus	62.16	20.47
GSMUA_Achr5P20210_001	Banana	nucleus	69.37	19.9
TraesCS2D01G059200.1	Wheat	cytosol	2.7	4.55
HORVU2Hr1G013300.6	Barley	cytosol	1.8	1.68
TraesCS2A01G080900.1	Wheat	nucleus	0.0	0.0
TraesCS2D01G079000.1	Wheat	nucleus	0.0	0.0

Protein Annotations

EMBL:AK106697	EnsemblPlants:Os05t0506900-01	EnsemblPlantsGene:Os05g0506900	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Brix	InterPro:IPR007109	PANTHER:PTHR12728	PFscan:PS50833	ProteinID:BAS94804.1	TMHMM:TMhelix
UniParc:UPI000188AEDB	UniProt:B7EZK3	MapMan:17.1.2.2.1.11.1	:	:	:

Description

Similar to Brix domain-containing protein 1. (Os05t0506900-01)

Coordinates

chr5:-:25041531..25043493

Molecular Weight (calculated)

12558.5 Da

IEP (calculated)

10.520

GRAVY (calculated)

0.001

Length

111 amino acids

Sequence
(BLAST)

001: MVAIRAPKSH RAKRELLKHA PKLVETGKKT LVLHGTKTSA VLNSVLADLF HLKRDNAVRY SKKNENIRPF ESGGETSLEF FSLKTDCSLI VVSSIYSICN
101: YRLLLLFLAI W

Best Arabidopsis Sequence Match ( AT3G23620.1 )
(BLAST)

001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE

Arabidopsis Description

Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.