Factsheet for Os01t0513800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19780	Sorghum	mitochondrion	90.97	90.97
Zm00001d038646_P002	Maize	mitochondrion	88.39	88.67
Zm00001d018141_P001	Maize	mitochondrion	88.39	88.67
TraesCS5D01G217000.1	Wheat	mitochondrion	84.52	83.71
TraesCS5D01G426000.1	Wheat	mitochondrion	84.84	83.49
TraesCS5A01G215000.1	Wheat	nucleus	84.19	83.39
TraesCS5B01G208800.1	Wheat	mitochondrion	83.55	83.28
HORVU5Hr1G061870.1	Barley	nucleus	82.9	81.85
Os05t0506900-01	Rice	nucleus	28.71	80.18
PGSC0003DMT400072406	Potato	cytosol	72.58	70.98
VIT_08s0007g03890.t01	Wine grape	nucleus	69.03	67.94
GSMUA_Achr11P...	Banana	mitochondrion	73.55	67.46
Solyc10g083600.1.1	Tomato	nucleus	72.58	66.77
TraesCS2D01G079000.1	Wheat	nucleus	14.19	66.67
KRH20030	Soybean	nucleus	67.42	66.56
KRH32652	Soybean	nucleus	67.42	66.56
CDX85117	Canola	nucleus	65.48	64.44
CDX77493	Canola	cytosol	65.48	64.44
Bra014967.1-P	Field mustard	cytosol	65.48	64.44
AT3G23620.1	Thale cress	cytosol	63.55	62.74
CDY18105	Canola	nucleus	63.23	62.03
CDY50460	Canola	nucleus	62.9	61.71
Bra028325.1-P	Field mustard	nucleus	62.9	61.71
TraesCS2A01G080900.1	Wheat	nucleus	12.9	60.61
GSMUA_Achr5P20210_001	Banana	nucleus	74.19	59.43
CDX95401	Canola	cytosol	19.68	53.51
TraesCS2D01G059200.1	Wheat	cytosol	10.97	51.52
CDY33857	Canola	cytosol, mitochondrion, nucleus	16.45	41.8
HORVU2Hr1G013300.6	Barley	cytosol	15.81	41.18

Protein Annotations

MapMan:17.1.2.2.1.11.1	EntrezGene:4323989	EMBL:AK100776	ProteinID:BAB32971.1	ProteinID:BAF05099.1	ProteinID:BAS72401.1
InterPro:Brix	ncoils:Coil	ProteinID:EAZ12108.1	GO:GO:0000027	GO:GO:0000463	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0019843	InterPro:IPR007109	EnsemblPlantsGene:Os01g0513800	EnsemblPlants:Os01t0513800-01	PFAM:PF04427
PFscan:PS50833	PANTHER:PTHR12728	UniProt:Q9AWM9	SMART:SM00879	UniParc:UPI000013790C	RefSeq:XP_015623130.1
SEG:seg	:	:	:	:	:

Description

Similar to Brix domain containing protein 1 homolog. (Os01t0513800-01)

Coordinates

chr1:-:18140790..18142881

Molecular Weight (calculated)

35216.0 Da

IEP (calculated)

10.352

GRAVY (calculated)

-0.494

Length

310 amino acids

Sequence
(BLAST)

001: MVAAIRVPRS QRAKRELLKH APKLVETGKK TLILHGTKTS AVLNSVLADL FHLKRDNAVK YSKKNDNIRP FESGGETSLE FFSLKTDCSL IVYGSHSKKR
101: PNNLVLGRTY DHHIYDLVEV GVENYKSIES YVYDKKLAPK LGSKPFFAFI GEHFESVEEL KHLKEVLLDL FKGEVVENLN LAGVDRVFVC TAISPTTVYM
201: MHCALRLKRS GTSIPRIELV EVGPSMDLVV RRHRYPVESL KKEAMKTADH AKKMKNVTKD PVHGKLGKVY IPDQQIAKMS LSNDVKGLKR ERREAKKNKD
301: HSKKQKINPE

Best Arabidopsis Sequence Match ( AT3G23620.1 )
(BLAST)

001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE

Arabidopsis Description

Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.