Factsheet for PGSC0003DMT400072406

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g083600.1.1	Tomato	nucleus	99.37	93.47
VIT_08s0007g03890.t01	Wine grape	nucleus	77.29	77.78
KRH32652	Soybean	nucleus	73.82	74.52
KRH20030	Soybean	nucleus	73.5	74.2
EES19780	Sorghum	mitochondrion	71.61	73.23
Os01t0513800-01	Rice	nucleus	70.98	72.58
Zm00001d018141_P001	Maize	mitochondrion	70.35	72.17
Zm00001d038646_P002	Maize	mitochondrion	70.03	71.84
GSMUA_Achr11P...	Banana	mitochondrion	73.19	68.64
AT3G23620.1	Thale cress	cytosol	67.82	68.47
CDX77493	Canola	cytosol	67.82	68.25
Bra014967.1-P	Field mustard	cytosol	67.82	68.25
CDX85117	Canola	nucleus	67.82	68.25
TraesCS5D01G426000.1	Wheat	mitochondrion	67.19	67.62
CDY50460	Canola	nucleus	67.19	67.41
HORVU5Hr1G061870.1	Barley	nucleus	66.56	67.2
CDY18105	Canola	nucleus	66.88	67.09
TraesCS5B01G208800.1	Wheat	mitochondrion	65.62	66.88
TraesCS5A01G215000.1	Wheat	nucleus	65.93	66.77
TraesCS5D01G217000.1	Wheat	mitochondrion	65.93	66.77
Bra028325.1-P	Field mustard	nucleus	66.56	66.77
Os05t0506900-01	Rice	nucleus	21.77	62.16
GSMUA_Achr5P20210_001	Banana	nucleus	72.87	59.69
CDX95401	Canola	cytosol	19.56	54.39
TraesCS2D01G079000.1	Wheat	nucleus	10.41	50.0
CDY33857	Canola	cytosol, mitochondrion, nucleus	18.3	47.54
TraesCS2A01G080900.1	Wheat	nucleus	9.78	46.97
TraesCS2D01G059200.1	Wheat	cytosol	8.83	42.42
HORVU2Hr1G013300.6	Barley	cytosol	12.93	34.45

Protein Annotations

EnsemblPlants:PGSC0003DMT400072406	EnsemblPlantsGene:PGSC0003DMG400028174	EntrezGene:102597675	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	InterPro:Brix	InterPro:IPR007109	PANTHER:PTHR12728	PFAM:PF04427
PFscan:PS50833	PGSC:PGSC0003DMG400028174	RefSeq:XP_006339116.1	SEG:seg	SMART:SM00879	UniParc:UPI000294D19A
UniProt:M1CQ87	MapMan:17.1.2.2.1.11.1	:	:	:	:

Description

Brix domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028174]

Coordinates

chr10:-:55585246..55588867

Molecular Weight (calculated)

36266.2 Da

IEP (calculated)

10.331

GRAVY (calculated)

-0.619

Length

317 amino acids

Sequence
(BLAST)

001: MMKFKTPQKG RIRRELEKRA PKLVETGKKT LILHGTKTSQ VLNDVMTEIY HLKRDNSVKY TRKNDNIRPF ESGGETSLEF FSLKTDCSLF VYGSHSKKRP
101: NNLVLGRTYD HHIYDLVEVG VEEFKSMKSF KYDKNLAPKI GSKPFFAFMG EGFESVEELK HLKEVLLDLF HGEVVTNLNL AGLDRVYVCV AVSPNRVFFT
201: HCALRLKKSG TVVPRIELVE VGPSMDLVTR RHRLPDDSLR KEAMKTSLEK AKKKEKNVVK DAIQGKLGKI YIPDQKVGSV ALPHKAKGVK RERREAKLKH
301: GTTEELPEEK KQKLDSE

Best Arabidopsis Sequence Match ( AT3G23620.1 )
(BLAST)

001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE

Arabidopsis Description

Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.