CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95401	Canola	cytosol	53.28	57.02
Os05t0506900-01	Rice	nucleus	39.34	43.24
CDX77493	Canola	cytosol	57.38	22.22
CDX85117	Canola	nucleus	57.38	22.22
CDY18105	Canola	nucleus	57.38	22.15
CDY50460	Canola	nucleus	56.56	21.84
AT3G23620.1	Thale cress	cytosol	54.92	21.34
VIT_08s0007g03890.t01	Wine grape	nucleus	54.1	20.95
KRH32652	Soybean	nucleus	49.18	19.11
GSMUA_Achr11P...	Banana	mitochondrion	52.46	18.93
KRH20030	Soybean	nucleus	47.54	18.47
PGSC0003DMT400072406	Potato	cytosol	47.54	18.3
Solyc10g083600.1.1	Tomato	nucleus	47.54	17.21
EES19780	Sorghum	mitochondrion	42.62	16.77
GSMUA_Achr5P20210_001	Banana	nucleus	52.46	16.54
Zm00001d018141_P001	Maize	mitochondrion	41.8	16.5
Zm00001d038646_P002	Maize	mitochondrion	41.8	16.5
Os01t0513800-01	Rice	nucleus	41.8	16.45
HORVU5Hr1G061870.1	Barley	nucleus	41.8	16.24
TraesCS5B01G208800.1	Wheat	mitochondrion	40.98	16.08
TraesCS5A01G215000.1	Wheat	nucleus	40.98	15.97
TraesCS5D01G217000.1	Wheat	mitochondrion	40.98	15.97
TraesCS5D01G426000.1	Wheat	mitochondrion	40.16	15.56
TraesCS2D01G059200.1	Wheat	cytosol	2.46	4.55
HORVU2Hr1G013300.6	Barley	cytosol	2.46	2.52
TraesCS2A01G080900.1	Wheat	nucleus	0.0	0.0
TraesCS2D01G079000.1	Wheat	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY33857	EnsemblPlantsGene:GSBRNA2T00055335001	GO:A0A078H8J4	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR016135	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	MetaCyc:PWY-7511	PANTHER:PTHR12728	ProteinID:CDY33857
ProteinID:CDY33857.1	ScanProsite:PS00183	SUPFAM:SSF54495	TMHMM:TMhelix	UniParc:UPI0004EE4D91	UniPathway:UPA00143
UniProt:A0A078H8J4	MapMan:35.1	:	:	:	:

Description

BnaC06g04960DBnaC06g04960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8J4]

Coordinates

chrLK032323:-:123114..124437

Molecular Weight (calculated)

13920.4 Da

IEP (calculated)

9.095

GRAVY (calculated)

0.332

Length

122 amino acids

Sequence
(BLAST)

001: MMKIRTPKTH KAKRVLEQRV PKLVENGKKT LILDERDAKR NENIRPFESG GETSLEFFSL KTDCSIFAVI FVPPAPLHPH IYSNGHICLG ISLSISFCFF
101: TLCIMFFVLF LVSLCWMLLS AV

Best Arabidopsis Sequence Match ( AT3G23620.1 )
(BLAST)

001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE

Arabidopsis Description

Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.