Factsheet for GSMUA_Achr11P21560_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g03890.t01	Wine grape	nucleus	70.71	75.87
EES19780	Sorghum	mitochondrion	68.05	74.19
GSMUA_Achr5P20210_001	Banana	nucleus	84.62	73.9
Zm00001d038646_P002	Maize	mitochondrion	67.46	73.79
Zm00001d018141_P001	Maize	mitochondrion	67.46	73.79
Os01t0513800-01	Rice	nucleus	67.46	73.55
PGSC0003DMT400072406	Potato	cytosol	68.64	73.19
KRH32652	Soybean	nucleus	66.57	71.66
KRH20030	Soybean	nucleus	66.57	71.66
Os05t0506900-01	Rice	nucleus	22.78	69.37
Solyc10g083600.1.1	Tomato	nucleus	68.64	68.84
TraesCS5D01G426000.1	Wheat	mitochondrion	63.31	67.94
TraesCS5B01G208800.1	Wheat	mitochondrion	62.43	67.85
HORVU5Hr1G061870.1	Barley	nucleus	63.02	67.83
TraesCS5A01G215000.1	Wheat	nucleus	62.13	67.09
TraesCS5D01G217000.1	Wheat	mitochondrion	62.13	67.09
Bra014967.1-P	Field mustard	cytosol	60.35	64.76
CDX85117	Canola	nucleus	60.35	64.76
CDX77493	Canola	cytosol	60.35	64.76
AT3G23620.1	Thale cress	cytosol	59.17	63.69
CDY18105	Canola	nucleus	58.88	62.97
Bra028325.1-P	Field mustard	nucleus	58.58	62.66
CDY50460	Canola	nucleus	58.28	62.34
CDX95401	Canola	cytosol	19.53	57.89
CDY33857	Canola	cytosol, mitochondrion, nucleus	18.93	52.46
TraesCS2D01G079000.1	Wheat	nucleus	9.76	50.0
TraesCS2A01G080900.1	Wheat	nucleus	9.17	46.97
TraesCS2D01G059200.1	Wheat	cytosol	8.28	42.42
HORVU2Hr1G013300.6	Barley	cytosol	11.83	33.61

Protein Annotations

EnsemblPlants:GSMUA_Achr11P21560_001	EnsemblPlants:GSMUA_Achr11T21560_001	EnsemblPlantsGene:GSMUA_Achr11G21560_001	InterPro:Brix	InterPro:IPR007109	PANTHER:PTHR12728
PFAM:PF04427	PFscan:PS50833	SEG:seg	SMART:SM00879	UniParc:UPI0002953279	UniProt:M0RU86
MapMan:17.1.2.2.1.11.1	:	:	:	:	:

Description

Ribosome production factor 2 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr11G21560_001]

Coordinates

chr11:+:22131256..22139527

Molecular Weight (calculated)

38586.3 Da

IEP (calculated)

10.868

GRAVY (calculated)

-0.563

Length

338 amino acids

Sequence
(BLAST)

001: MLVMPTSRNH LMLRRQRRRR LPLTMLKIKT PKTQRAKREV EKRAPKLVES GKKTLILHGT KTSDVLNTVL TQIYHLKRDN AVKYTKKNEN IRPFESGGET
101: SLEFFSLKTD CSLFVFGSHS KKRPNNLVLG RMFDHHIYDL VEVGVDNFRP MESFEYDKKL TPRIGSKPFF AFVGEGFESI EELKHLKEVL LDLFRGEVVE
201: NLNLAGIDHV FVCTALSSST VFFTHCALRL KRSGTAIPRM ELVEVGPSMD LVVRRQRLPN DSLKKEAKKT TNGQPKKKIK NVSSDVLQGK IGKIYIPDQK
301: VGGIALSNDV KGLKRERREA RKTKVGENEA KKRKTASK

Best Arabidopsis Sequence Match ( AT3G23620.1 )
(BLAST)

001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE

Arabidopsis Description

Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.