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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH32652 Soybean nucleus 96.82 96.82
VIT_08s0007g03890.t01 Wine grape nucleus 78.98 78.73
PGSC0003DMT400072406 Potato cytosol 74.2 73.5
CDX85117 Canola nucleus 71.34 71.11
Bra014967.1-P Field mustard cytosol 71.02 70.79
CDX77493 Canola cytosol 71.02 70.79
Solyc10g083600.1.1 Tomato nucleus 74.2 69.14
EES19780 Sorghum mitochondrion 67.52 68.39
CDY18105 Canola nucleus 68.79 68.35
Bra028325.1-P Field mustard nucleus 68.79 68.35
Zm00001d018141_P001 Maize mitochondrion 67.2 68.28
CDY50460 Canola nucleus 68.47 68.04
Zm00001d038646_P002 Maize mitochondrion 66.88 67.96
AT3G23620.1 Thale cress cytosol 67.52 67.52
Os01t0513800-01 Rice nucleus 66.56 67.42
GSMUA_Achr11P... Banana mitochondrion 71.66 66.57
TraesCS5B01G208800.1 Wheat mitochondrion 63.69 64.31
TraesCS5D01G426000.1 Wheat mitochondrion 64.33 64.13
TraesCS5A01G215000.1 Wheat nucleus 63.69 63.9
HORVU5Hr1G061870.1 Barley nucleus 63.69 63.69
TraesCS5D01G217000.1 Wheat mitochondrion 63.38 63.58
Os05t0506900-01 Rice nucleus 21.66 61.26
CDX95401 Canola cytosol 21.66 59.65
GSMUA_Achr5P20210_001 Banana nucleus 71.97 58.4
CDY33857 Canola cytosol, mitochondrion, nucleus 18.47 47.54
TraesCS2D01G079000.1 Wheat nucleus 8.6 40.91
TraesCS2A01G080900.1 Wheat nucleus 7.96 37.88
TraesCS2D01G059200.1 Wheat cytosol 7.01 33.33
HORVU2Hr1G013300.6 Barley cytosol 11.46 30.25
Protein Annotations
EntrezGene:100814010MapMan:17.1.2.2.1.11.1EMBL:ACUP02008226InterPro:BrixEnsemblPlantsGene:GLYMA_13G151300GO:GO:0000027
GO:GO:0000463GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005730GO:GO:0006139GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016043GO:GO:0019843UniProt:I1LZF7InterPro:IPR007109
EnsemblPlants:KRH20030ProteinID:KRH20030ProteinID:KRH20030.1PFAM:PF04427PFscan:PS50833PANTHER:PTHR12728
SMART:SM00879UniParc:UPI000233AF50SEG:seg:::
Description
hypothetical protein
Coordinates
chr13:-:26546643..26549700
Molecular Weight (calculated)
35584.1 Da
IEP (calculated)
10.361
GRAVY (calculated)
-0.706
Length
314 amino acids
Sequence
(BLAST)
001: MLEIKTAKTR KGKRELEKRA PKLVESGKKT LILHGTKTSG VLNAVLAQIY HLKKDSAVKY SRKNENVKPF EAGGETSLEF FSLKTDCSVF VYGSHSKKRP
101: DNLVIGRTYD HHIFDLVEVG VENFKPMESF SYNKKLAPKE GSKPFIVFIG EGFEAVEELK HLKEVLLDLL RGEVVENLNL AGVDRAYVCA ALSPNRVFFT
201: HCALRLKKSG TVVPRMELEE VGPSMDFVVR RHRPPNESLR KEAMKTSREK PKKKEKNVKR DELQGKIGSI YIPDQKVGET PLPYKAKGVK RERQEAKRKN
301: ESDGSASKRK KEDS
Best Arabidopsis Sequence Match ( AT3G23620.1 )
(BLAST)
001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE
Arabidopsis Description
Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.