Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
nucleus: 27291164 endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH32652 | Soybean | nucleus | 96.82 | 96.82 |
VIT_08s0007g03890.t01 | Wine grape | nucleus | 78.98 | 78.73 |
PGSC0003DMT400072406 | Potato | cytosol | 74.2 | 73.5 |
CDX85117 | Canola | nucleus | 71.34 | 71.11 |
Bra014967.1-P | Field mustard | cytosol | 71.02 | 70.79 |
CDX77493 | Canola | cytosol | 71.02 | 70.79 |
Solyc10g083600.1.1 | Tomato | nucleus | 74.2 | 69.14 |
EES19780 | Sorghum | mitochondrion | 67.52 | 68.39 |
CDY18105 | Canola | nucleus | 68.79 | 68.35 |
Bra028325.1-P | Field mustard | nucleus | 68.79 | 68.35 |
Zm00001d018141_P001 | Maize | mitochondrion | 67.2 | 68.28 |
CDY50460 | Canola | nucleus | 68.47 | 68.04 |
Zm00001d038646_P002 | Maize | mitochondrion | 66.88 | 67.96 |
AT3G23620.1 | Thale cress | cytosol | 67.52 | 67.52 |
Os01t0513800-01 | Rice | nucleus | 66.56 | 67.42 |
GSMUA_Achr11P... | Banana | mitochondrion | 71.66 | 66.57 |
TraesCS5B01G208800.1 | Wheat | mitochondrion | 63.69 | 64.31 |
TraesCS5D01G426000.1 | Wheat | mitochondrion | 64.33 | 64.13 |
TraesCS5A01G215000.1 | Wheat | nucleus | 63.69 | 63.9 |
HORVU5Hr1G061870.1 | Barley | nucleus | 63.69 | 63.69 |
TraesCS5D01G217000.1 | Wheat | mitochondrion | 63.38 | 63.58 |
Os05t0506900-01 | Rice | nucleus | 21.66 | 61.26 |
CDX95401 | Canola | cytosol | 21.66 | 59.65 |
GSMUA_Achr5P20210_001 | Banana | nucleus | 71.97 | 58.4 |
CDY33857 | Canola | cytosol, mitochondrion, nucleus | 18.47 | 47.54 |
TraesCS2D01G079000.1 | Wheat | nucleus | 8.6 | 40.91 |
TraesCS2A01G080900.1 | Wheat | nucleus | 7.96 | 37.88 |
TraesCS2D01G059200.1 | Wheat | cytosol | 7.01 | 33.33 |
HORVU2Hr1G013300.6 | Barley | cytosol | 11.46 | 30.25 |
Protein Annotations
EntrezGene:100814010 | MapMan:17.1.2.2.1.11.1 | EMBL:ACUP02008226 | InterPro:Brix | EnsemblPlantsGene:GLYMA_13G151300 | GO:GO:0000027 |
GO:GO:0000463 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019843 | UniProt:I1LZF7 | InterPro:IPR007109 |
EnsemblPlants:KRH20030 | ProteinID:KRH20030 | ProteinID:KRH20030.1 | PFAM:PF04427 | PFscan:PS50833 | PANTHER:PTHR12728 |
SMART:SM00879 | UniParc:UPI000233AF50 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr13:-:26546643..26549700
Molecular Weight (calculated)
35584.1 Da
IEP (calculated)
10.361
GRAVY (calculated)
-0.706
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEIKTAKTR KGKRELEKRA PKLVESGKKT LILHGTKTSG VLNAVLAQIY HLKKDSAVKY SRKNENVKPF EAGGETSLEF FSLKTDCSVF VYGSHSKKRP
101: DNLVIGRTYD HHIFDLVEVG VENFKPMESF SYNKKLAPKE GSKPFIVFIG EGFEAVEELK HLKEVLLDLL RGEVVENLNL AGVDRAYVCA ALSPNRVFFT
201: HCALRLKKSG TVVPRMELEE VGPSMDFVVR RHRPPNESLR KEAMKTSREK PKKKEKNVKR DELQGKIGSI YIPDQKVGET PLPYKAKGVK RERQEAKRKN
301: ESDGSASKRK KEDS
101: DNLVIGRTYD HHIFDLVEVG VENFKPMESF SYNKKLAPKE GSKPFIVFIG EGFEAVEELK HLKEVLLDLL RGEVVENLNL AGVDRAYVCA ALSPNRVFFT
201: HCALRLKKSG TVVPRMELEE VGPSMDFVVR RHRPPNESLR KEAMKTSREK PKKKEKNVKR DELQGKIGSI YIPDQKVGET PLPYKAKGVK RERQEAKRKN
301: ESDGSASKRK KEDS
001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE
Arabidopsis Description
Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.