Factsheet for Solyc10g083600.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072406	Potato	cytosol	93.47	99.37
VIT_08s0007g03890.t01	Wine grape	nucleus	72.11	77.14
KRH32652	Soybean	nucleus	69.44	74.52
KRH20030	Soybean	nucleus	69.14	74.2
EES19780	Sorghum	mitochondrion	67.36	73.23
Os01t0513800-01	Rice	nucleus	66.77	72.58
Zm00001d018141_P001	Maize	mitochondrion	66.17	72.17
Zm00001d038646_P002	Maize	mitochondrion	65.88	71.84
GSMUA_Achr11P...	Banana	mitochondrion	68.84	68.64
Bra014967.1-P	Field mustard	cytosol	63.8	68.25
CDX77493	Canola	cytosol	63.8	68.25
CDX85117	Canola	nucleus	63.8	68.25
AT3G23620.1	Thale cress	cytosol	63.5	68.15
TraesCS5D01G426000.1	Wheat	mitochondrion	63.2	67.62
HORVU5Hr1G061870.1	Barley	nucleus	62.91	67.52
CDY50460	Canola	nucleus	63.2	67.41
TraesCS5B01G208800.1	Wheat	mitochondrion	62.02	67.2
TraesCS5A01G215000.1	Wheat	nucleus	62.31	67.09
TraesCS5D01G217000.1	Wheat	mitochondrion	62.31	67.09
CDY18105	Canola	nucleus	62.91	67.09
Bra028325.1-P	Field mustard	nucleus	62.61	66.77
Os05t0506900-01	Rice	nucleus	20.47	62.16
GSMUA_Achr5P20210_001	Banana	nucleus	68.84	59.95
CDX95401	Canola	cytosol	18.4	54.39
TraesCS2D01G079000.1	Wheat	nucleus	9.79	50.0
CDY33857	Canola	cytosol, mitochondrion, nucleus	17.21	47.54
TraesCS2A01G080900.1	Wheat	nucleus	9.2	46.97
TraesCS2D01G059200.1	Wheat	cytosol	8.31	42.42
HORVU2Hr1G013300.6	Barley	cytosol	12.17	34.45

Protein Annotations

MapMan:17.1.2.2.1.11.1	InterPro:Brix	GO:GO:0000027	GO:GO:0000463	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0019843	InterPro:IPR007109	UniProt:K4D3E7	PFAM:PF04427
PFscan:PS50833	PANTHER:PTHR12728	SMART:SM00879	EnsemblPlantsGene:Solyc10g083600.1	EnsemblPlants:Solyc10g083600.1.1	TMHMM:TMhelix
UniParc:UPI0002769F29	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:63381886..63386317

Molecular Weight (calculated)

38606.2 Da

IEP (calculated)

10.288

GRAVY (calculated)

-0.480

Length

337 amino acids

Sequence
(BLAST)

001: MKVSCFFFLS SPFFSLVFVI MMKFKTPQKG RIRRELEKRA PKLVETGKKT LILHGTKTSQ VLNDVMTEIY HLKRDNSVKY TRKNDNIRPF ESGGETSLEF
101: FSLKTDCSLF VYGSHSKKRP NNLVLGRTYD HHIYDLVEVG VEEFKSMKSF KYDKNLAPKI GSKPFFAFMG EGFESVEELK HLKEVLLDLF HGEVVTNLNL
201: AGLDRVYVCV AVSPNRVFFT HCALRLKKSG TVVPRIELVE VGPSMDLVTR RHRLPDDSLR KEAMKTSLEK AKKKEKNVVK DAIQGKLGKI YIPDQKVGSV
301: PLPHNAKGVK RERREAKLKH GTTEELPEEK KQKLDSE

Best Arabidopsis Sequence Match ( AT3G23620.1 )
(BLAST)

001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE

Arabidopsis Description

Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.