Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400069241 | Potato | cytosol | 56.54 | 60.15 |
| VIT_16s0039g01850.t01 | Wine grape | cytosol | 57.6 | 58.63 |
| Solyc08g005200.2.1 | Tomato | cytosol | 55.83 | 57.88 |
| Solyc08g076540.2.1 | Tomato | nucleus | 55.83 | 57.88 |
| Solyc06g062360.2.1 | Tomato | cytosol | 55.48 | 57.51 |
| Solyc11g066910.1.1 | Tomato | plastid | 55.12 | 57.14 |
| CDY38084 | Canola | cytosol | 39.22 | 56.35 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 54.42 | 55.2 |
| CDX70720 | Canola | cytosol, plastid | 53.0 | 54.35 |
| EES02705 | Sorghum | cytosol | 53.71 | 54.29 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 52.3 | 54.21 |
| CDY16976 | Canola | cytosol, plastid | 52.65 | 53.99 |
| CDX78712 | Canola | cytosol, plastid | 52.65 | 53.99 |
| Bra006372.1-P | Field mustard | cytosol, plastid | 52.65 | 53.99 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 52.65 | 53.79 |
| Bra008592.1-P | Field mustard | cytosol, plastid | 53.0 | 53.76 |
| Os01t0254900-01 | Rice | plasma membrane | 53.0 | 53.57 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 51.59 | 53.48 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 52.3 | 53.43 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 52.3 | 53.43 |
| CDX69417 | Canola | cytosol, plastid | 52.65 | 53.41 |
| AT5G16830.1 | Thale cress | cytosol, plastid | 50.88 | 51.61 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 49.47 | 51.28 |
| EES05663 | Sorghum | cytosol | 44.17 | 46.64 |
| Os02t0702800-01 | Rice | cytosol | 43.11 | 45.69 |
| Zm00001d040286_P003 | Maize | cytosol | 47.0 | 44.48 |
| Zm00001d017756_P001 | Maize | extracellular | 38.16 | 43.55 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 40.64 | 43.23 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 40.64 | 43.23 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 37.81 | 39.78 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 40.64 | 39.38 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 37.46 | 38.27 |
| Zm00001d008333_P003 | Maize | cytosol | 41.34 | 36.0 |
| Zm00001d039536_P001 | Maize | cytosol | 32.51 | 34.98 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005770 | GO:GO:0005794 | GO:GO:0006623 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0030140 | GO:GO:0031201 | GO:GO:0045324 | GO:GO:0048278 |
| InterPro:IPR000727 | UniProt:K4C8Z6 | PFAM:PF05739 | PFAM:PF14523 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF138 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 |
| EnsemblPlantsGene:Solyc06g072760.2 | EnsemblPlants:Solyc06g072760.2.1 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI00027659B6 | SEG:seg | : | : | : | : |
Description
Syntaxin-21 [Source:Projected from Arabidopsis thaliana (AT5G16830) UniProtKB/Swiss-Prot;Acc:Q39233]
Coordinates
chr6:-:44870913..44872492
Molecular Weight (calculated)
31217.3 Da
IEP (calculated)
7.675
GRAVY (calculated)
-0.204
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFEDLESGS SLYVQGGSRS WERQTTQAIT NPSASDNRQS IVVGVFQINT ALTNFQRLVN TLGTPKDTLQ LRHKLHSTRQ QIAELIKETS ANLKQAIGSN
101: RHSQSSVTKK IANAKLAKDF QSVLKKFQRA QQLAAQREAA FTPSISQEIN SSRSIEIQIS SSISPESSSI LLESKRQDVV QLEHEIVFNK AIIEEREQGM
201: IEIQQQIGEL NEMFKDLALL VHEQGTMLDD ISSNIGSSHD ATAQAAKQLT KASKIQQCNS STSCLLLVIF GVILLIIIVL VLA
101: RHSQSSVTKK IANAKLAKDF QSVLKKFQRA QQLAAQREAA FTPSISQEIN SSRSIEIQIS SSISPESSSI LLESKRQDVV QLEHEIVFNK AIIEEREQGM
201: IEIQQQIGEL NEMFKDLALL VHEQGTMLDD ISSNIGSSHD ATAQAAKQLT KASKIQQCNS STSCLLLVIF GVILLIIIVL VLA
001: MSFQDLEAGT RSPAPNRFTG GRQQRPSSRG DPSQEVAAGI FRISTAVNSF FRLVNSIGTP KDTLELRDKL QKTRLQISEL VKNTSAKLKE ASEADLHGSA
101: SQIKKIADAK LAKDFQSVLK EFQKAQRLAA EREITYTPVV TKEIPTSYNA PELDTESLRI SQQQALLLQS RRQEVVFLDN EITFNEAIIE EREQGIREIE
201: DQIRDVNGMF KDLALMVNHQ GNIVDDISSN LDNSHAATTQ ATVQLRKAAK TQRSNSSLTC LLILIFGIVL LIVIIVVLV
101: SQIKKIADAK LAKDFQSVLK EFQKAQRLAA EREITYTPVV TKEIPTSYNA PELDTESLRI SQQQALLLQS RRQEVVFLDN EITFNEAIIE EREQGIREIE
201: DQIRDVNGMF KDLALMVNHQ GNIVDDISSN LDNSHAATTQ ATVQLRKAAK TQRSNSSLTC LLILIFGIVL LIVIIVVLV
Arabidopsis Description
SYP21Syntaxin-21 [Source:UniProtKB/Swiss-Prot;Acc:Q39233]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.