Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 8
- vacuole 5
- plasma membrane 7
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400011347 | Potato | endoplasmic reticulum, golgi, plasma membrane | 97.3 | 97.3 |
| Solyc01g111150.2.1 | Tomato | plastid | 85.33 | 85.66 |
| VIT_03s0038g01820.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 72.97 | 74.7 |
| KRH24148 | Soybean | endoplasmic reticulum | 69.11 | 69.38 |
| KRH29113 | Soybean | endoplasmic reticulum | 68.73 | 68.2 |
| GSMUA_Achr7P05650_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 64.48 | 65.23 |
| GSMUA_Achr4P19950_001 | Banana | plasma membrane | 63.71 | 64.96 |
| GSMUA_Achr3P12620_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 61.78 | 62.5 |
| Os06t0715500-01 | Rice | golgi, plasma membrane | 61.78 | 62.26 |
| CDY13837 | Canola | endoplasmic reticulum | 60.23 | 60.47 |
| TraesCS7D01G382700.1 | Wheat | golgi | 59.46 | 60.39 |
| TraesCS7A01G386100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 59.46 | 60.39 |
| HORVU7Hr1G091720.1 | Barley | endoplasmic reticulum, golgi | 59.46 | 60.39 |
| Bra031166.1-P | Field mustard | endoplasmic reticulum | 59.46 | 59.69 |
| CDX82001 | Canola | endoplasmic reticulum | 59.46 | 59.69 |
| TraesCS7B01G289000.2 | Wheat | plasma membrane | 59.46 | 59.46 |
| Bra001982.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 58.3 | 58.98 |
| Zm00001d036403_P002 | Maize | mitochondrion | 58.69 | 58.91 |
| EER88961 | Sorghum | endoplasmic reticulum | 58.69 | 58.91 |
| CDX99613 | Canola | endoplasmic reticulum | 57.92 | 58.59 |
| CDX71289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 57.92 | 58.59 |
| Bra030317.1-P | Field mustard | endoplasmic reticulum | 57.92 | 58.59 |
| CDY67289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 57.53 | 58.2 |
| AT2G16595.1 | Thale cress | endoplasmic reticulum, golgi | 56.37 | 58.17 |
| CDY15912 | Canola | endoplasmic reticulum | 57.53 | 57.75 |
| AT2G21160.1 | Thale cress | endoplasmic reticulum | 57.53 | 57.75 |
| CDY46204 | Canola | plastid | 53.67 | 52.85 |
| Zm00001d014785_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 59.07 | 50.83 |
| CDY72561 | Canola | endoplasmic reticulum | 44.79 | 47.74 |
Protein Annotations
| EnsemblPlants:Solyc10g054880.1.1 | EnsemblPlantsGene:Solyc10g054880.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006613 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:TRAP_alpha | PANTHER:PTHR12924 | PFAM:PF03896 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0002769314 | UniProt:K4D181 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr10:+:56041421..56045607
Molecular Weight (calculated)
28000.3 Da
IEP (calculated)
4.514
GRAVY (calculated)
0.090
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIRVFSVFL ALILFSAPFI QVARCQSDPE TDVVEGTGEA GDLGIVDEDV RDFGSDSFSP APGIETVCVF PKNPSKVVAA GEESELLVGM KNDGDSSLNI
101: IAIQASVHLP FDHRYLVQNL SVQAFNNATV PPSAQATFPY IFAVSKFMQP GSFDLVGIIV YEIDQNPFQS TFYNGTIEVT EPGGLLSVES VFLFCLGIAL
201: LALLGFWIRG QIQNLSKKTK RAPKAKVEVG TATTDASTDE WLEGTAYSQS LSNKSKKKK
101: IAIQASVHLP FDHRYLVQNL SVQAFNNATV PPSAQATFPY IFAVSKFMQP GSFDLVGIIV YEIDQNPFQS TFYNGTIEVT EPGGLLSVES VFLFCLGIAL
201: LALLGFWIRG QIQNLSKKTK RAPKAKVEVG TATTDASTDE WLEGTAYSQS LSNKSKKKK
001: MMNLRVLFLA LLLLASPLLQ VARCQSDAED HSSLVDDVVG ENTDDAVEED DHDLDMNLSS FPGVETVCVF PKNSAKLVPA GEETELLVGL KNEGKTRVGV
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
Arabidopsis Description
Translocon-associated protein subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P45434]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.