Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d036403_P002 | Maize | mitochondrion | 81.06 | 94.57 |
| EER88961 | Sorghum | endoplasmic reticulum | 81.06 | 94.57 |
| Os06t0715500-01 | Rice | golgi, plasma membrane | 75.75 | 88.72 |
| TraesCS7A01G386100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 72.76 | 85.88 |
| TraesCS7D01G382700.1 | Wheat | golgi | 72.43 | 85.49 |
| HORVU7Hr1G091720.1 | Barley | endoplasmic reticulum, golgi | 72.43 | 85.49 |
| TraesCS7B01G289000.2 | Wheat | plasma membrane | 72.43 | 84.17 |
| GSMUA_Achr4P19950_001 | Banana | plasma membrane | 60.47 | 71.65 |
| GSMUA_Achr7P05650_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 60.8 | 71.48 |
| GSMUA_Achr3P12620_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 59.14 | 69.53 |
| VIT_03s0038g01820.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 54.49 | 64.82 |
| PGSC0003DMT400004129 | Potato | plasma membrane | 52.16 | 60.85 |
| Solyc01g111150.2.1 | Tomato | plastid | 51.83 | 60.47 |
| PGSC0003DMT400011347 | Potato | endoplasmic reticulum, golgi, plasma membrane | 51.16 | 59.46 |
| Solyc10g054880.1.1 | Tomato | nucleus | 50.83 | 59.07 |
| KRH24148 | Soybean | endoplasmic reticulum | 50.5 | 58.91 |
| KRH29113 | Soybean | endoplasmic reticulum | 50.5 | 58.24 |
| CDX82001 | Canola | endoplasmic reticulum | 49.17 | 57.36 |
| Bra031166.1-P | Field mustard | endoplasmic reticulum | 48.84 | 56.98 |
| Bra030317.1-P | Field mustard | endoplasmic reticulum | 48.17 | 56.64 |
| CDX99613 | Canola | endoplasmic reticulum | 48.17 | 56.64 |
| CDY13837 | Canola | endoplasmic reticulum | 48.51 | 56.59 |
| CDY15912 | Canola | endoplasmic reticulum | 47.84 | 55.81 |
| AT2G21160.1 | Thale cress | endoplasmic reticulum | 47.51 | 55.43 |
| AT2G16595.1 | Thale cress | endoplasmic reticulum, golgi | 43.19 | 51.79 |
| CDX71289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 42.86 | 50.39 |
| Bra001982.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 42.86 | 50.39 |
| CDY67289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 42.52 | 50.0 |
| CDY46204 | Canola | plastid | 39.87 | 45.63 |
| CDY72561 | Canola | endoplasmic reticulum | 34.55 | 42.8 |
Protein Annotations
| EnsemblPlants:Zm00001d014785_P001 | EnsemblPlants:Zm00001d014785_T001 | EnsemblPlantsGene:Zm00001d014785 | EntrezGene:100193254 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TRAP_alpha | PFAM:PF03896 | ProteinID:AQK67172.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI000844BD34 | UniProt:A0A1D6GWB6 | MapMan:35.1 | : | : | : |
Description
translocon-associated protein homolog1 translocon-associated protein homolog1
Coordinates
chr5:+:63016459..63020299
Molecular Weight (calculated)
32394.9 Da
IEP (calculated)
4.609
GRAVY (calculated)
0.316
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRVLLTAL LLAFLLVATP FTARVARADS EEDAAAAEVV EGADLGIVGD DTQVSSDGPL SPAPGVETVV VFPKNAGKIV LAGEETELLV GLQNEGMVMQ
101: VFIVNATVLL SSLFHCHANS CVCYYAYIVF TGESTLNVVA VHSTLHLPFD HNMYGQNLTV QNFFNASVPV SVQATFPYKF VVSKFLQPGA YDLVGYIVYE
201: IDQHPYQNVF YNGTIEVVEA GGLLSVESVF LITLGTALLG LFGLWAYGQV QQLSKKTKKA PKVELGTGTT DANIDEWLEG TSFVQRSKSK KADLKLALQS
301: S
101: VFIVNATVLL SSLFHCHANS CVCYYAYIVF TGESTLNVVA VHSTLHLPFD HNMYGQNLTV QNFFNASVPV SVQATFPYKF VVSKFLQPGA YDLVGYIVYE
201: IDQHPYQNVF YNGTIEVVEA GGLLSVESVF LITLGTALLG LFGLWAYGQV QQLSKKTKKA PKVELGTGTT DANIDEWLEG TSFVQRSKSK KADLKLALQS
301: S
001: MMNLRVLFLA LLLLASPLLQ VARCQSDAED HSSLVDDVVG ENTDDAVEED DHDLDMNLSS FPGVETVCVF PKNSAKLVPA GEETELLVGL KNEGKTRVGV
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
Arabidopsis Description
Translocon-associated protein subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P45434]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.