CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13837	Canola	endoplasmic reticulum	98.06	98.06
CDX99613	Canola	endoplasmic reticulum	93.02	93.75
CDY15912	Canola	endoplasmic reticulum	91.86	91.86
AT2G21160.1	Thale cress	endoplasmic reticulum	88.76	88.76
VIT_03s0038g01820.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	61.24	62.45
TraesCS7D01G382700.1	Wheat	golgi	60.47	61.18
TraesCS7A01G386100.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	60.47	61.18
HORVU7Hr1G091720.1	Barley	endoplasmic reticulum, golgi	60.47	61.18
TraesCS7B01G289000.2	Wheat	plasma membrane	60.85	60.62
KRH29113	Soybean	endoplasmic reticulum	61.24	60.54
GSMUA_Achr7P05650_001	Banana	endoplasmic reticulum, golgi, plasma membrane	59.69	60.16
KRH24148	Soybean	endoplasmic reticulum	60.08	60.08
PGSC0003DMT400011347	Potato	endoplasmic reticulum, golgi, plasma membrane	60.08	59.85
GSMUA_Achr4P19950_001	Banana	plasma membrane	58.91	59.84
Solyc10g054880.1.1	Tomato	nucleus	59.69	59.46
Os06t0715500-01	Rice	golgi, plasma membrane	58.91	59.14
GSMUA_Achr3P12620_001	Banana	endoplasmic reticulum, golgi, plasma membrane	58.14	58.59
PGSC0003DMT400004129	Potato	plasma membrane	57.75	57.75
Zm00001d036403_P002	Maize	mitochondrion	56.98	56.98
Solyc01g111150.2.1	Tomato	plastid	56.98	56.98
EER88961	Sorghum	endoplasmic reticulum	56.98	56.98
CDX71289	Canola	endoplasmic reticulum, golgi, plasma membrane	55.43	55.86
CDY67289	Canola	endoplasmic reticulum, golgi, plasma membrane	55.04	55.47
CDY46204	Canola	plastid	50.78	49.81
CDY72561	Canola	endoplasmic reticulum	46.51	49.38
Zm00001d014785_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	57.36	49.17

Protein Annotations

EnsemblPlants:CDX82001	EnsemblPlantsGene:GSBRNA2T00136979001	GO:A0A078CXV7	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:TRAP_alpha
PANTHER:PTHR12924	PFAM:PF03896	ProteinID:CDX82001	ProteinID:CDX82001.1	SEG:seg	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0004EB868B	MapMan:35.1	:	:	:

Description

BnaC08g36000D

Coordinates

chrLK031826:+:1849808..1852071

Molecular Weight (calculated)

27988.5 Da

IEP (calculated)

4.948

GRAVY (calculated)

0.038

Length

258 amino acids

Sequence
(BLAST)

001: MNVRVLFLAL LLLASPLLQV ARCQVDAEDH SSIVDDVVGE HSDSGAEEDD QDLDNINLTS APGVETVSVF PKNSAKVVPA GEETELLVAL KNDGKSNVGV
101: MGIRASVHLP YDHKLLVQNL TMMRYNNASI PTSVQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLITLGIAL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STDASLDEWL EGTHLAKTLS GKSKSKKN

Best Arabidopsis Sequence Match ( AT2G21160.1 )
(BLAST)

001: MMNLRVLFLA LLLLASPLLQ VARCQSDAED HSSLVDDVVG ENTDDAVEED DHDLDMNLSS FPGVETVCVF PKNSAKLVPA GEETELLVGL KNEGKTRVGV
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN

Arabidopsis Description

Translocon-associated protein subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P45434]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.