Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 99.61 | 99.61 |
| Bra001982.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 97.66 | 97.66 |
| CDY72561 | Canola | endoplasmic reticulum | 83.2 | 87.65 |
| CDY46204 | Canola | plastid | 86.72 | 84.41 |
| AT2G16595.1 | Thale cress | endoplasmic reticulum, golgi | 82.42 | 84.06 |
| VIT_03s0038g01820.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 59.77 | 60.47 |
| KRH29113 | Soybean | endoplasmic reticulum | 59.77 | 58.62 |
| PGSC0003DMT400011347 | Potato | endoplasmic reticulum, golgi, plasma membrane | 58.98 | 58.3 |
| KRH24148 | Soybean | endoplasmic reticulum | 58.59 | 58.14 |
| Solyc10g054880.1.1 | Tomato | nucleus | 58.2 | 57.53 |
| GSMUA_Achr7P05650_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 57.03 | 57.03 |
| PGSC0003DMT400004129 | Potato | plasma membrane | 56.25 | 55.81 |
| Solyc01g111150.2.1 | Tomato | plastid | 56.25 | 55.81 |
| GSMUA_Achr4P19950_001 | Banana | plasma membrane | 54.69 | 55.12 |
| CDX82001 | Canola | endoplasmic reticulum | 55.47 | 55.04 |
| CDX99613 | Canola | endoplasmic reticulum | 54.69 | 54.69 |
| CDY13837 | Canola | endoplasmic reticulum | 55.08 | 54.65 |
| CDY15912 | Canola | endoplasmic reticulum | 54.69 | 54.26 |
| GSMUA_Achr3P12620_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 53.52 | 53.52 |
| TraesCS7D01G382700.1 | Wheat | golgi | 51.17 | 51.37 |
| HORVU7Hr1G091720.1 | Barley | endoplasmic reticulum, golgi | 51.17 | 51.37 |
| TraesCS7A01G386100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 51.17 | 51.37 |
| Os06t0715500-01 | Rice | golgi, plasma membrane | 51.56 | 51.36 |
| TraesCS7B01G289000.2 | Wheat | plasma membrane | 51.17 | 50.58 |
| EER88961 | Sorghum | endoplasmic reticulum | 50.0 | 49.61 |
| Zm00001d036403_P002 | Maize | mitochondrion | 50.0 | 49.61 |
| Zm00001d014785_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 50.0 | 42.52 |
Protein Annotations
| EnsemblPlants:CDY67289 | EnsemblPlantsGene:GSBRNA2T00060586001 | GO:A0A078JKK9 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TRAP_alpha |
| PANTHER:PTHR12924 | PFAM:PF03896 | ProteinID:CDY67289 | ProteinID:CDY67289.1 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0004EE6A69 | UniProt:A0A078JKK9 | MapMan:35.1 | : | : |
Description
BnaCnng54310DBnaCnng54310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKK9]
Coordinates
chrLK035943:-:8515..10541
Molecular Weight (calculated)
27831.6 Da
IEP (calculated)
4.743
GRAVY (calculated)
0.123
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTIVIRLLF LAFLLLASPP FLQVALGQSD SEDSGFEVSD VGEDESETEQ VFGLELTSAP GIETLCVFPN NRAKIIKAGT ETEVLVGMKN DGQSDVDIVA
101: VKGSLHLPFD QKPLVQNLTA LSFGNASVPV SAQATFPYIF AVSKFLEAGA FDLVGTIVYE MDGKPYQSIF YNGTIEVVED GPLFRMESVF LSGLLISFIV
201: VLIIYIQNGL RHMTKKTKRA TKAKVEVGTA AKDASLDEWL EGTAYTQSSS KSKKKK
101: VKGSLHLPFD QKPLVQNLTA LSFGNASVPV SAQATFPYIF AVSKFLEAGA FDLVGTIVYE MDGKPYQSIF YNGTIEVVED GPLFRMESVF LSGLLISFIV
201: VLIIYIQNGL RHMTKKTKRA TKAKVEVGTA AKDASLDEWL EGTAYTQSSS KSKKKK
001: MRTSFRLLFF AFLLLVSPFL KVALCQSDSE DSGFEVSDVG EEESDAEEVF GLELTSAPGI ETLCVFPKNS AKIIKAGVET ELLVGMKNDG QSNVDIVAVK
101: GSLHLPFDQN AVQNLTALSF SNASVPTSAQ ATLPYAFAVS KFLQAGAFDF VGTIIYEIDG KPYQSIFYNG TIEVVEDGPL FRMESVFLSG LLIFVIAFLA
201: IYIQNVLKHM TKKTKRAPKV EVGTATKDAS HDEWLEGTSY TQSSSKSKKK K
101: GSLHLPFDQN AVQNLTALSF SNASVPTSAQ ATLPYAFAVS KFLQAGAFDF VGTIIYEIDG KPYQSIFYNG TIEVVEDGPL FRMESVFLSG LLIFVIAFLA
201: IYIQNVLKHM TKKTKRAPKV EVGTATKDAS HDEWLEGTSY TQSSSKSKKK K
Arabidopsis Description
At2g16595 [Source:UniProtKB/TrEMBL;Acc:Q6AWS7]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.