Factsheet for Zm00001d036403_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88961	Sorghum	endoplasmic reticulum	94.96	94.96
Os06t0715500-01	Rice	golgi, plasma membrane	87.21	87.55
TraesCS7A01G386100.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	83.72	84.71
HORVU7Hr1G091720.1	Barley	endoplasmic reticulum, golgi	83.72	84.71
TraesCS7D01G382700.1	Wheat	golgi	83.33	84.31
TraesCS7B01G289000.2	Wheat	plasma membrane	83.72	83.4
Zm00001d014785_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	94.57	81.06
GSMUA_Achr4P19950_001	Banana	plasma membrane	69.38	70.47
GSMUA_Achr7P05650_001	Banana	endoplasmic reticulum, golgi, plasma membrane	69.38	69.92
GSMUA_Achr3P12620_001	Banana	endoplasmic reticulum, golgi, plasma membrane	68.22	68.75
VIT_03s0038g01820.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	63.57	64.82
PGSC0003DMT400004129	Potato	plasma membrane	60.85	60.85
Solyc01g111150.2.1	Tomato	plastid	60.47	60.47
PGSC0003DMT400011347	Potato	endoplasmic reticulum, golgi, plasma membrane	59.69	59.46
KRH24148	Soybean	endoplasmic reticulum	59.3	59.3
Solyc10g054880.1.1	Tomato	nucleus	58.91	58.69
KRH29113	Soybean	endoplasmic reticulum	59.3	58.62
CDX82001	Canola	endoplasmic reticulum	56.98	56.98
Bra031166.1-P	Field mustard	endoplasmic reticulum	56.59	56.59
CDY13837	Canola	endoplasmic reticulum	56.2	56.2
Bra030317.1-P	Field mustard	endoplasmic reticulum	55.43	55.86
CDX99613	Canola	endoplasmic reticulum	55.43	55.86
CDY15912	Canola	endoplasmic reticulum	55.04	55.04
AT2G21160.1	Thale cress	endoplasmic reticulum	54.26	54.26
AT2G16595.1	Thale cress	endoplasmic reticulum, golgi	50.39	51.79
CDX71289	Canola	endoplasmic reticulum, golgi, plasma membrane	50.0	50.39
Bra001982.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	50.0	50.39
CDY67289	Canola	endoplasmic reticulum, golgi, plasma membrane	49.61	50.0
CDY46204	Canola	plastid	46.12	45.25
CDY72561	Canola	endoplasmic reticulum	39.92	42.39

Protein Annotations

EMBL:BT035387	EnsemblPlants:Zm00001d036403_P002	EnsemblPlants:Zm00001d036403_T002	EnsemblPlantsGene:Zm00001d036403	EntrezGene:100273641	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
GO:GO:0016021	InterPro:TRAP_alpha	PANTHER:PTHR12924	PFAM:PF03896	ProteinID:AQK80929.1	SEG:seg
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00017B6771	UniProt:B4FE49	MapMan:35.1	:

Description

Translocon-associated protein subunit alpha

Coordinates

chr6:-:86959688..86963593

Molecular Weight (calculated)

27760.1 Da

IEP (calculated)

4.510

GRAVY (calculated)

0.130

Length

258 amino acids

Sequence
(BLAST)

001: MATRVWLTAL LLGFLVAASP FTGRVARAES EEDAAAAEVV EGADLGIVGD DTQVSSDGPL SPAPGVETVV VFPKNAGKIV LAGEETELLV GLQNDGESIL
101: NVVAVHSTLH LPFDHNMYGQ NLTVQNFFNS SVPVSVQATF PYKFVVSKFL QPGAYDLVGY IVYEIDQHPY QNVFYNGTIE VVEAGGLLSV ESVFLITLGF
201: ALLGLFGLWA YGQVQQLSKK TKKAPKVELG TGTTDANIDE WLEGTSFVQR SKSKKKQT

Best Arabidopsis Sequence Match ( AT2G21160.1 )
(BLAST)

001: MMNLRVLFLA LLLLASPLLQ VARCQSDAED HSSLVDDVVG ENTDDAVEED DHDLDMNLSS FPGVETVCVF PKNSAKLVPA GEETELLVGL KNEGKTRVGV
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN

Arabidopsis Description

Translocon-associated protein subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P45434]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.