CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71289	Canola	endoplasmic reticulum, golgi, plasma membrane	88.07	83.59
CDY67289	Canola	endoplasmic reticulum, golgi, plasma membrane	87.65	83.2
Bra001982.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	87.24	82.81
AT2G16595.1	Thale cress	endoplasmic reticulum, golgi	72.84	70.52
CDY46204	Canola	plastid	75.31	69.58
VIT_03s0038g01820.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	50.21	48.22
KRH29113	Soybean	endoplasmic reticulum	51.03	47.51
KRH24148	Soybean	endoplasmic reticulum	49.79	46.9
CDX82001	Canola	endoplasmic reticulum	49.38	46.51
GSMUA_Achr7P05650_001	Banana	endoplasmic reticulum, golgi, plasma membrane	48.97	46.48
CDY13837	Canola	endoplasmic reticulum	48.97	46.12
PGSC0003DMT400011347	Potato	endoplasmic reticulum, golgi, plasma membrane	48.56	45.56
CDX99613	Canola	endoplasmic reticulum	47.74	45.31
CDY15912	Canola	endoplasmic reticulum	47.74	44.96
Solyc10g054880.1.1	Tomato	nucleus	47.74	44.79
GSMUA_Achr4P19950_001	Banana	plasma membrane	46.5	44.49
Solyc01g111150.2.1	Tomato	plastid	46.5	43.8
PGSC0003DMT400004129	Potato	plasma membrane	46.09	43.41
GSMUA_Achr3P12620_001	Banana	endoplasmic reticulum, golgi, plasma membrane	45.68	43.36
TraesCS7D01G382700.1	Wheat	golgi	45.27	43.14
HORVU7Hr1G091720.1	Barley	endoplasmic reticulum, golgi	45.27	43.14
TraesCS7A01G386100.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	45.27	43.14
TraesCS7B01G289000.2	Wheat	plasma membrane	45.27	42.47
Os06t0715500-01	Rice	golgi, plasma membrane	44.03	41.63
EER88961	Sorghum	endoplasmic reticulum	43.21	40.7
Zm00001d036403_P002	Maize	mitochondrion	42.39	39.92
Zm00001d014785_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	42.8	34.55

Protein Annotations

EnsemblPlants:CDY72561	EnsemblPlantsGene:GSBRNA2T00030677001	GO:A0A078K473	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:TRAP_alpha
PANTHER:PTHR12924	PFAM:PF03896	ProteinID:CDY72561	ProteinID:CDY72561.1	SEG:seg	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0004EDFCA3	UniProt:A0A078K473	MapMan:35.1	:	:

Description

BnaCnng78290DBnaCnng78290D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K473]

Coordinates

chrLK051829:+:386..2001

Molecular Weight (calculated)

26824.6 Da

IEP (calculated)

4.462

GRAVY (calculated)

0.395

Length

243 amino acids

Sequence
(BLAST)

001: MKTIVIRLLF LAFLLLASPF LQVALCQSDS EDSGFEVSDV GEDESETEQV FGLELTSAPG IETLCVFPNN RAKIIKAGTE TEVLVGMKND GQSDVDIVAV
101: KGSLHLPFDQ KPLVQNLTAL SFGNASVPVS AQATFPYIFA VSKFLEAGAF DLVGTIVYEM DGKPYQSIFY NGTVEVVEDG PLFRMESVFL SGLLISLIVV
201: LIIYIQNGLR HMTKVQTFTS HFAIFSNFHL MLYPFVLKIQ YQK

Best Arabidopsis Sequence Match ( AT2G16595.1 )
(BLAST)

001: MRTSFRLLFF AFLLLVSPFL KVALCQSDSE DSGFEVSDVG EEESDAEEVF GLELTSAPGI ETLCVFPKNS AKIIKAGVET ELLVGMKNDG QSNVDIVAVK
101: GSLHLPFDQN AVQNLTALSF SNASVPTSAQ ATLPYAFAVS KFLQAGAFDF VGTIIYEIDG KPYQSIFYNG TIEVVEDGPL FRMESVFLSG LLIFVIAFLA
201: IYIQNVLKHM TKKTKRAPKV EVGTATKDAS HDEWLEGTSY TQSSSKSKKK K

Arabidopsis Description

At2g16595 [Source:UniProtKB/TrEMBL;Acc:Q6AWS7]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.