Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 8
- vacuole 5
- plasma membrane 6
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P19950_001 | Banana | plasma membrane | 86.72 | 87.4 |
| GSMUA_Achr3P12620_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 84.77 | 84.77 |
| Os06t0715500-01 | Rice | golgi, plasma membrane | 74.61 | 74.32 |
| VIT_03s0038g01820.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 72.66 | 73.52 |
| TraesCS7D01G382700.1 | Wheat | golgi | 71.48 | 71.76 |
| TraesCS7A01G386100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 71.48 | 71.76 |
| HORVU7Hr1G091720.1 | Barley | endoplasmic reticulum, golgi | 71.09 | 71.37 |
| EER88961 | Sorghum | endoplasmic reticulum | 71.88 | 71.32 |
| TraesCS7B01G289000.2 | Wheat | plasma membrane | 71.09 | 70.27 |
| Zm00001d036403_P002 | Maize | mitochondrion | 69.92 | 69.38 |
| KRH24148 | Soybean | endoplasmic reticulum | 68.75 | 68.22 |
| KRH29113 | Soybean | endoplasmic reticulum | 69.14 | 67.82 |
| PGSC0003DMT400011347 | Potato | endoplasmic reticulum, golgi, plasma membrane | 66.02 | 65.25 |
| Solyc10g054880.1.1 | Tomato | nucleus | 65.23 | 64.48 |
| Solyc01g111150.2.1 | Tomato | plastid | 64.45 | 63.95 |
| PGSC0003DMT400004129 | Potato | plasma membrane | 64.06 | 63.57 |
| Bra030317.1-P | Field mustard | endoplasmic reticulum | 61.33 | 61.33 |
| CDX99613 | Canola | endoplasmic reticulum | 60.94 | 60.94 |
| Zm00001d014785_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 71.48 | 60.8 |
| CDY15912 | Canola | endoplasmic reticulum | 60.94 | 60.47 |
| CDY13837 | Canola | endoplasmic reticulum | 60.16 | 59.69 |
| CDX82001 | Canola | endoplasmic reticulum | 60.16 | 59.69 |
| Bra031166.1-P | Field mustard | endoplasmic reticulum | 60.16 | 59.69 |
| AT2G21160.1 | Thale cress | endoplasmic reticulum | 58.59 | 58.14 |
| Bra001982.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 57.81 | 57.81 |
| AT2G16595.1 | Thale cress | endoplasmic reticulum, golgi | 56.64 | 57.77 |
| CDX71289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 57.42 | 57.42 |
| CDY67289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 57.03 | 57.03 |
| CDY46204 | Canola | plastid | 53.12 | 51.71 |
| CDY72561 | Canola | endoplasmic reticulum | 46.48 | 48.97 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P05650_001 | EnsemblPlants:GSMUA_Achr7T05650_001 | EnsemblPlantsGene:GSMUA_Achr7G05650_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TRAP_alpha |
| PANTHER:PTHR12924 | PFAM:PF03896 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000296F9AF |
| UniProt:M0TF05 | MapMan:35.1 | : | : | : | : |
Description
Translocon-associated protein subunit alpha [Source:GMGC_GENE;Acc:GSMUA_Achr7G05650_001]
Coordinates
chr7:-:4208264..4214512
Molecular Weight (calculated)
27646.1 Da
IEP (calculated)
4.431
GRAVY (calculated)
0.205
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIRVFSLLI ALLLFASPIV QVARCQSDED VAATEVIEGS NLGIVGDDTQ VFGDGTLGPA PGIDTVCVFP KNAARLVPAG EETELLVGLH NEGESTLEVV
101: AIRASLHLPF DHHMFVQNLT LQEFYNASVP VSAQATFPYV FAVSKYLQPG SFDLVGTIVY EIDQQPYQSI FYNGTVEVVE AGGFLSIESV FLVTLGVALI
201: GFLGLWAYGQ IQQFSKKTKR SPKVEVGTGT TDANMDEWLE GTAYAQSLSS KSKKKK
101: AIRASLHLPF DHHMFVQNLT LQEFYNASVP VSAQATFPYV FAVSKYLQPG SFDLVGTIVY EIDQQPYQSI FYNGTVEVVE AGGFLSIESV FLVTLGVALI
201: GFLGLWAYGQ IQQFSKKTKR SPKVEVGTGT TDANMDEWLE GTAYAQSLSS KSKKKK
001: MMNLRVLFLA LLLLASPLLQ VARCQSDAED HSSLVDDVVG ENTDDAVEED DHDLDMNLSS FPGVETVCVF PKNSAKLVPA GEETELLVGL KNEGKTRVGV
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
Arabidopsis Description
Translocon-associated protein subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P45434]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.