Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 7
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g111150.2.1 | Tomato | plastid | 98.06 | 98.06 |
| PGSC0003DMT400011347 | Potato | endoplasmic reticulum, golgi, plasma membrane | 87.21 | 86.87 |
| VIT_03s0038g01820.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 71.32 | 72.73 |
| KRH24148 | Soybean | endoplasmic reticulum | 67.83 | 67.83 |
| KRH29113 | Soybean | endoplasmic reticulum | 67.83 | 67.05 |
| GSMUA_Achr4P19950_001 | Banana | plasma membrane | 65.12 | 66.14 |
| GSMUA_Achr7P05650_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 63.57 | 64.06 |
| GSMUA_Achr3P12620_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 63.18 | 63.67 |
| Os06t0715500-01 | Rice | golgi, plasma membrane | 62.79 | 63.03 |
| TraesCS7D01G382700.1 | Wheat | golgi | 61.63 | 62.35 |
| TraesCS7A01G386100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 61.63 | 62.35 |
| HORVU7Hr1G091720.1 | Barley | endoplasmic reticulum, golgi | 61.63 | 62.35 |
| TraesCS7B01G289000.2 | Wheat | plasma membrane | 61.63 | 61.39 |
| EER88961 | Sorghum | endoplasmic reticulum | 61.24 | 61.24 |
| Zm00001d036403_P002 | Maize | mitochondrion | 60.85 | 60.85 |
| CDY13837 | Canola | endoplasmic reticulum | 58.14 | 58.14 |
| CDX82001 | Canola | endoplasmic reticulum | 57.75 | 57.75 |
| Bra031166.1-P | Field mustard | endoplasmic reticulum | 57.75 | 57.75 |
| CDX99613 | Canola | endoplasmic reticulum | 56.59 | 57.03 |
| Bra030317.1-P | Field mustard | endoplasmic reticulum | 56.59 | 57.03 |
| CDX71289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 56.2 | 56.64 |
| CDY67289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 55.81 | 56.25 |
| Bra001982.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 55.81 | 56.25 |
| CDY15912 | Canola | endoplasmic reticulum | 56.2 | 56.2 |
| AT2G16595.1 | Thale cress | endoplasmic reticulum, golgi | 54.26 | 55.78 |
| AT2G21160.1 | Thale cress | endoplasmic reticulum | 55.43 | 55.43 |
| Zm00001d014785_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 60.85 | 52.16 |
| CDY46204 | Canola | plastid | 51.16 | 50.19 |
| CDY72561 | Canola | endoplasmic reticulum | 43.41 | 46.09 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400004129 | EnsemblPlantsGene:PGSC0003DMG400001632 | EntrezGene:102584880 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TRAP_alpha |
| PANTHER:PTHR12924 | PFAM:PF03896 | PGSC:PGSC0003DMG400001632 | RefSeq:XP_006359653.1 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0002959370 | UniProt:M0ZMX8 | MapMan:35.1 | : | : |
Description
Translocon-associated protein, alpha subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400001632]
Coordinates
chr1:+:87203582..87208255
Molecular Weight (calculated)
27910.3 Da
IEP (calculated)
4.597
GRAVY (calculated)
0.076
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIRVFCVLA LLLFSSSFLQ VARGQSDPAA EVVEGTEEAG DLGIVGDDVQ DFSSESYTPA AGVETVCVFP KNPSKVVAAG EECELLVGMK NDGESHLNII
101: AIQASVHLPF DHRYLVQNLS VQAFNNATVP PSAQATFPYI FAVSKFMQPG SFDLVGTIIY EIDQNAYQNV FYNGTIEVTE PGGLLSVESV FLFCLAVALL
201: GLLGFWIRGQ IQNLSKKTKR APKAKVEVGT ATTDASTDEW LQGTAYSQSQ ANKLKKKK
101: AIQASVHLPF DHRYLVQNLS VQAFNNATVP PSAQATFPYI FAVSKFMQPG SFDLVGTIIY EIDQNAYQNV FYNGTIEVTE PGGLLSVESV FLFCLAVALL
201: GLLGFWIRGQ IQNLSKKTKR APKAKVEVGT ATTDASTDEW LQGTAYSQSQ ANKLKKKK
001: MRTSFRLLFF AFLLLVSPFL KVALCQSDSE DSGFEVSDVG EEESDAEEVF GLELTSAPGI ETLCVFPKNS AKIIKAGVET ELLVGMKNDG QSNVDIVAVK
101: GSLHLPFDQN AVQNLTALSF SNASVPTSAQ ATLPYAFAVS KFLQAGAFDF VGTIIYEIDG KPYQSIFYNG TIEVVEDGPL FRMESVFLSG LLIFVIAFLA
201: IYIQNVLKHM TKKTKRAPKV EVGTATKDAS HDEWLEGTSY TQSSSKSKKK K
101: GSLHLPFDQN AVQNLTALSF SNASVPTSAQ ATLPYAFAVS KFLQAGAFDF VGTIIYEIDG KPYQSIFYNG TIEVVEDGPL FRMESVFLSG LLIFVIAFLA
201: IYIQNVLKHM TKKTKRAPKV EVGTATKDAS HDEWLEGTSY TQSSSKSKKK K
Arabidopsis Description
At2g16595 [Source:UniProtKB/TrEMBL;Acc:Q6AWS7]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.