Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 7
- golgi 5
- extracellular 5
- vacuole 4
- plasma membrane 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82001 | Canola | endoplasmic reticulum | 88.76 | 88.76 |
| Bra031166.1-P | Field mustard | endoplasmic reticulum | 87.98 | 87.98 |
| CDY13837 | Canola | endoplasmic reticulum | 87.6 | 87.6 |
| Bra030317.1-P | Field mustard | endoplasmic reticulum | 85.27 | 85.94 |
| CDX99613 | Canola | endoplasmic reticulum | 84.88 | 85.55 |
| CDY15912 | Canola | endoplasmic reticulum | 84.88 | 84.88 |
| VIT_03s0038g01820.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 59.69 | 60.87 |
| TraesCS7D01G382700.1 | Wheat | golgi | 59.3 | 60.0 |
| HORVU7Hr1G091720.1 | Barley | endoplasmic reticulum, golgi | 59.3 | 60.0 |
| TraesCS7A01G386100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 59.3 | 60.0 |
| TraesCS7B01G289000.2 | Wheat | plasma membrane | 59.3 | 59.07 |
| GSMUA_Achr4P19950_001 | Banana | plasma membrane | 58.14 | 59.06 |
| GSMUA_Achr7P05650_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 58.14 | 58.59 |
| Os06t0715500-01 | Rice | golgi, plasma membrane | 57.75 | 57.98 |
| KRH24148 | Soybean | endoplasmic reticulum | 57.75 | 57.75 |
| PGSC0003DMT400011347 | Potato | endoplasmic reticulum, golgi, plasma membrane | 57.75 | 57.53 |
| Solyc10g054880.1.1 | Tomato | nucleus | 57.75 | 57.53 |
| GSMUA_Achr3P12620_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 56.98 | 57.42 |
| KRH29113 | Soybean | endoplasmic reticulum | 57.36 | 56.7 |
| PGSC0003DMT400004129 | Potato | plasma membrane | 55.43 | 55.43 |
| Solyc01g111150.2.1 | Tomato | plastid | 54.65 | 54.65 |
| EER88961 | Sorghum | endoplasmic reticulum | 54.26 | 54.26 |
| Zm00001d036403_P002 | Maize | mitochondrion | 54.26 | 54.26 |
| AT2G16595.1 | Thale cress | endoplasmic reticulum, golgi | 52.33 | 53.78 |
| Zm00001d014785_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 55.43 | 47.51 |
Protein Annotations
| MapMan:35.1 | EntrezGene:816651 | ProteinID:AAD29800.2 | ProteinID:AEC07129.1 | ArrayExpress:AT2G21160 | EnsemblPlantsGene:AT2G21160 |
| RefSeq:AT2G21160 | TAIR:AT2G21160 | RefSeq:AT2G21160-TAIR-G | EnsemblPlants:AT2G21160.1 | TAIR:AT2G21160.1 | EMBL:AY050351 |
| Unigene:At.20513 | EMBL:BT020421 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0005886 |
| GO:GO:0006613 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 |
| GO:GO:0016020 | GO:GO:0016021 | EMBL:L32016 | RefSeq:NP_565498.1 | UniProt:P45434 | PFAM:PF03896 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR12924 | UniProt:Q5M727 | SignalP:SignalP-noTM | TMHMM:TMhelix | InterPro:TRAP_alpha | UniParc:UPI0000135FFC |
| SEG:seg | : | : | : | : | : |
Description
Translocon-associated protein subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P45434]
Coordinates
chr2:+:9068252..9070473
Molecular Weight (calculated)
28169.0 Da
IEP (calculated)
4.843
GRAVY (calculated)
0.031
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MMNLRVLFLA LLLLASPLLQ VARCQSDAED HSSLVDDVVG ENTDDAVEED DHDLDMNLSS FPGVETVCVF PKNSAKLVPA GEETELLVGL KNEGKTRVGV
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.