Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15912 | Canola | endoplasmic reticulum | 98.05 | 97.29 |
| CDX82001 | Canola | endoplasmic reticulum | 93.75 | 93.02 |
| CDY13837 | Canola | endoplasmic reticulum | 92.97 | 92.25 |
| AT2G21160.1 | Thale cress | endoplasmic reticulum | 85.55 | 84.88 |
| VIT_03s0038g01820.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 60.94 | 61.66 |
| GSMUA_Achr7P05650_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 60.94 | 60.94 |
| TraesCS7A01G386100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 60.55 | 60.78 |
| HORVU7Hr1G091720.1 | Barley | endoplasmic reticulum, golgi | 60.55 | 60.78 |
| TraesCS7D01G382700.1 | Wheat | golgi | 60.55 | 60.78 |
| GSMUA_Achr4P19950_001 | Banana | plasma membrane | 60.16 | 60.63 |
| TraesCS7B01G289000.2 | Wheat | plasma membrane | 60.16 | 59.46 |
| KRH29113 | Soybean | endoplasmic reticulum | 60.55 | 59.39 |
| GSMUA_Achr3P12620_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 58.98 | 58.98 |
| KRH24148 | Soybean | endoplasmic reticulum | 59.38 | 58.91 |
| Os06t0715500-01 | Rice | golgi, plasma membrane | 58.98 | 58.75 |
| PGSC0003DMT400011347 | Potato | endoplasmic reticulum, golgi, plasma membrane | 58.98 | 58.3 |
| Solyc10g054880.1.1 | Tomato | nucleus | 58.59 | 57.92 |
| PGSC0003DMT400004129 | Potato | plasma membrane | 57.03 | 56.59 |
| Solyc01g111150.2.1 | Tomato | plastid | 56.64 | 56.2 |
| EER88961 | Sorghum | endoplasmic reticulum | 56.25 | 55.81 |
| Zm00001d036403_P002 | Maize | mitochondrion | 55.86 | 55.43 |
| CDX71289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 55.08 | 55.08 |
| CDY67289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 54.69 | 54.69 |
| CDY46204 | Canola | plastid | 50.39 | 49.05 |
| Zm00001d014785_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 56.64 | 48.17 |
| CDY72561 | Canola | endoplasmic reticulum | 45.31 | 47.74 |
Protein Annotations
| EnsemblPlants:CDX99613 | EnsemblPlantsGene:GSBRNA2T00108117001 | GO:A0A078EJV1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | InterPro:TRAP_alpha | PANTHER:PTHR12924 |
| PFAM:PF03896 | ProteinID:CDX99613 | ProteinID:CDX99613.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI0004EE1989 | MapMan:35.1 | : | : | : | : |
Description
BnaC04g33700D
Coordinates
chrLK031912:-:345923..347931
Molecular Weight (calculated)
27774.2 Da
IEP (calculated)
4.936
GRAVY (calculated)
0.025
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVRVLFLAL LLLASPLLQV ARSQVDDDHS SLVDDVVGEH SDSGADEDDQ DLDINLTSAP GVETVCVFPR NSARVVPAGE ETELLVALKN DGKPTVGVMG
101: IRASVHLPYD HKLLVQNLTT MRYNNASIPT SVQATFPYVF AVSQYLQPGA FDLVGYVIYD VEGKPYQSVF YNGTIEVVES GGLLSGESVF LITLGIALLL
201: LLGLWAYSQV QRLTKKTKKV SKVEVGTRST DASMDEWLEG THLAKSLSGK SKSKKN
101: IRASVHLPYD HKLLVQNLTT MRYNNASIPT SVQATFPYVF AVSQYLQPGA FDLVGYVIYD VEGKPYQSVF YNGTIEVVES GGLLSGESVF LITLGIALLL
201: LLGLWAYSQV QRLTKKTKKV SKVEVGTRST DASMDEWLEG THLAKSLSGK SKSKKN
001: MMNLRVLFLA LLLLASPLLQ VARCQSDAED HSSLVDDVVG ENTDDAVEED DHDLDMNLSS FPGVETVCVF PKNSAKLVPA GEETELLVGL KNEGKTRVGV
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
Arabidopsis Description
Translocon-associated protein subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P45434]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.