Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 7
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P05650_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 87.4 | 86.72 |
| GSMUA_Achr3P12620_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 82.28 | 81.64 |
| Os06t0715500-01 | Rice | golgi, plasma membrane | 74.02 | 73.15 |
| TraesCS7D01G382700.1 | Wheat | golgi | 71.65 | 71.37 |
| TraesCS7A01G386100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 71.65 | 71.37 |
| HORVU7Hr1G091720.1 | Barley | endoplasmic reticulum, golgi | 71.26 | 70.98 |
| TraesCS7B01G289000.2 | Wheat | plasma membrane | 72.05 | 70.66 |
| VIT_03s0038g01820.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 69.29 | 69.57 |
| Zm00001d036403_P002 | Maize | mitochondrion | 70.47 | 69.38 |
| EER88961 | Sorghum | endoplasmic reticulum | 70.47 | 69.38 |
| Solyc01g111150.2.1 | Tomato | plastid | 66.54 | 65.5 |
| PGSC0003DMT400004129 | Potato | plasma membrane | 66.14 | 65.12 |
| PGSC0003DMT400011347 | Potato | endoplasmic reticulum, golgi, plasma membrane | 65.75 | 64.48 |
| KRH29113 | Soybean | endoplasmic reticulum | 66.14 | 64.37 |
| KRH24148 | Soybean | endoplasmic reticulum | 65.35 | 64.34 |
| Solyc10g054880.1.1 | Tomato | nucleus | 64.96 | 63.71 |
| Zm00001d014785_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 71.65 | 60.47 |
| CDX99613 | Canola | endoplasmic reticulum | 60.63 | 60.16 |
| Bra030317.1-P | Field mustard | endoplasmic reticulum | 60.63 | 60.16 |
| CDY15912 | Canola | endoplasmic reticulum | 60.24 | 59.3 |
| CDY13837 | Canola | endoplasmic reticulum | 59.84 | 58.91 |
| CDX82001 | Canola | endoplasmic reticulum | 59.84 | 58.91 |
| Bra031166.1-P | Field mustard | endoplasmic reticulum | 59.84 | 58.91 |
| AT2G21160.1 | Thale cress | endoplasmic reticulum | 59.06 | 58.14 |
| AT2G16595.1 | Thale cress | endoplasmic reticulum, golgi | 55.12 | 55.78 |
| Bra001982.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 55.91 | 55.47 |
| CDX71289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 55.51 | 55.08 |
| CDY67289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 55.12 | 54.69 |
| CDY46204 | Canola | plastid | 51.97 | 50.19 |
| CDY72561 | Canola | endoplasmic reticulum | 44.49 | 46.5 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P19950_001 | EnsemblPlants:GSMUA_Achr4T19950_001 | EnsemblPlantsGene:GSMUA_Achr4G19950_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TRAP_alpha |
| PANTHER:PTHR12924 | PFAM:PF03896 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000295F642 |
| UniProt:M0SQF8 | MapMan:35.1 | : | : | : | : |
Description
Translocon-associated protein subunit alpha [Source:GMGC_GENE;Acc:GSMUA_Achr4G19950_001]
Coordinates
chr4:+:20742879..20749018
Molecular Weight (calculated)
27485.0 Da
IEP (calculated)
4.512
GRAVY (calculated)
0.194
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIRVCSFLI ALLLLASPLV QVARCQSDED VAAAEVVEGS DLGIVGDDTQ VFDGALDPAP GIDTVCVFPK NTAKLVPAGE ETELLVGLHN EGEAALKVVA
101: IHASLHLPFD HHMFVQNLTV QEFYNATVPV STQATFPYVF AVSRYLQPGS FDLVGTVVYE IDQQPYQNCF YNGTIEVVEA GGLLTIESVF LLTLGVALIG
201: LLGFWAYGQI QQLSKKTKRS PKVEVGTKTT DADMDEWLQG TAYAQSLSKS KKKK
101: IHASLHLPFD HHMFVQNLTV QEFYNATVPV STQATFPYVF AVSRYLQPGS FDLVGTVVYE IDQQPYQNCF YNGTIEVVEA GGLLTIESVF LLTLGVALIG
201: LLGFWAYGQI QQLSKKTKRS PKVEVGTKTT DADMDEWLQG TAYAQSLSKS KKKK
001: MMNLRVLFLA LLLLASPLLQ VARCQSDAED HSSLVDDVVG ENTDDAVEED DHDLDMNLSS FPGVETVCVF PKNSAKLVPA GEETELLVGL KNEGKTRVGV
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
Arabidopsis Description
Translocon-associated protein subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P45434]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.