Factsheet for Bra001982.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 8
vacuole 5
plasma membrane 7
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	endoplasmic reticulum, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71289	Canola	endoplasmic reticulum, golgi, plasma membrane	98.05	98.05
CDY67289	Canola	endoplasmic reticulum, golgi, plasma membrane	97.66	97.66
CDY72561	Canola	endoplasmic reticulum	82.81	87.24
CDY46204	Canola	plastid	86.33	84.03
AT2G16595.1	Thale cress	endoplasmic reticulum, golgi	81.64	83.27
VIT_03s0038g01820.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	60.94	61.66
PGSC0003DMT400011347	Potato	endoplasmic reticulum, golgi, plasma membrane	59.77	59.07
KRH29113	Soybean	endoplasmic reticulum	60.16	59.0
KRH24148	Soybean	endoplasmic reticulum	58.98	58.53
Solyc10g054880.1.1	Tomato	nucleus	58.98	58.3
GSMUA_Achr7P05650_001	Banana	endoplasmic reticulum, golgi, plasma membrane	57.81	57.81
Solyc01g111150.2.1	Tomato	plastid	56.64	56.2
GSMUA_Achr4P19950_001	Banana	plasma membrane	55.47	55.91
PGSC0003DMT400004129	Potato	plasma membrane	56.25	55.81
Bra031166.1-P	Field mustard	endoplasmic reticulum	55.47	55.04
Bra030317.1-P	Field mustard	endoplasmic reticulum	54.69	54.69
GSMUA_Achr3P12620_001	Banana	endoplasmic reticulum, golgi, plasma membrane	54.3	54.3
HORVU7Hr1G091720.1	Barley	endoplasmic reticulum, golgi	51.56	51.76
TraesCS7A01G386100.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	51.56	51.76
TraesCS7D01G382700.1	Wheat	golgi	51.56	51.76
Os06t0715500-01	Rice	golgi, plasma membrane	51.95	51.75
TraesCS7B01G289000.2	Wheat	plasma membrane	51.56	50.97
EER88961	Sorghum	endoplasmic reticulum	50.39	50.0
Zm00001d036403_P002	Maize	mitochondrion	50.39	50.0
Zm00001d014785_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	50.39	42.86

Protein Annotations

EnsemblPlants:Bra001982.1	EnsemblPlants:Bra001982.1-P	EnsemblPlantsGene:Bra001982	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:TRAP_alpha
PANTHER:PTHR12924	PFAM:PF03896	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00025442E7
UniProt:M4CCQ2	MapMan:35.1	:	:	:	:

Description

AT2G16595 (E=3e-090) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: translocon-associated protein alpha (TRAP alpha) family protein (TAIR:AT2G21160.1); Has 191 Blast hits to 191 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 18; Plants - 38; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

Coordinates

chrA10:-:12500378..12502222

Molecular Weight (calculated)

27884.6 Da

IEP (calculated)

4.754

GRAVY (calculated)

0.102

Length

256 amino acids

Sequence
(BLAST)

001: MKTIVIRHDL FLAFLLLASP FLQVALCQSD SEDSGFEVSD VGEDESETEQ VFGLELTSAP GIETLCVFPN NRAKIIKAGT ETEVLVGMKN DGPSDVDIVA
101: VKGSLHLPFD QKPLVQNLTT LSFGNASVPV SAQATFPYIF AVSKFLEAGA FDLVGTIVYE MDGKPYQSIF YNGTIEVVED GPLFRMESVF LSGLLISLIV
201: VLIIYIQNGL RHMTKKTKRA TKAKVEVGTA AKDASLDEWL EGTAYTQSSS KSKKKK

Best Arabidopsis Sequence Match ( AT2G16595.1 )
(BLAST)

001: MRTSFRLLFF AFLLLVSPFL KVALCQSDSE DSGFEVSDVG EEESDAEEVF GLELTSAPGI ETLCVFPKNS AKIIKAGVET ELLVGMKNDG QSNVDIVAVK
101: GSLHLPFDQN AVQNLTALSF SNASVPTSAQ ATLPYAFAVS KFLQAGAFDF VGTIIYEIDG KPYQSIFYNG TIEVVEDGPL FRMESVFLSG LLIFVIAFLA
201: IYIQNVLKHM TKKTKRAPKV EVGTATKDAS HDEWLEGTSY TQSSSKSKKK K

Arabidopsis Description

At2g16595 [Source:UniProtKB/TrEMBL;Acc:Q6AWS7]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.