CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71289	Canola	endoplasmic reticulum, golgi, plasma membrane	84.79	87.11
CDY67289	Canola	endoplasmic reticulum, golgi, plasma membrane	84.41	86.72
Bra001982.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	84.03	86.33
AT2G16595.1	Thale cress	endoplasmic reticulum, golgi	72.24	75.7
CDY72561	Canola	endoplasmic reticulum	69.58	75.31
VIT_03s0038g01820.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	52.85	54.94
KRH29113	Soybean	endoplasmic reticulum	54.37	54.79
PGSC0003DMT400011347	Potato	endoplasmic reticulum, golgi, plasma membrane	53.61	54.44
KRH24148	Soybean	endoplasmic reticulum	52.85	53.88
Solyc10g054880.1.1	Tomato	nucleus	52.85	53.67
GSMUA_Achr7P05650_001	Banana	endoplasmic reticulum, golgi, plasma membrane	51.71	53.12
GSMUA_Achr4P19950_001	Banana	plasma membrane	50.19	51.97
Solyc01g111150.2.1	Tomato	plastid	50.57	51.55
PGSC0003DMT400004129	Potato	plasma membrane	50.19	51.16
GSMUA_Achr3P12620_001	Banana	endoplasmic reticulum, golgi, plasma membrane	49.43	50.78
CDX82001	Canola	endoplasmic reticulum	49.81	50.78
CDX99613	Canola	endoplasmic reticulum	49.05	50.39
CDY13837	Canola	endoplasmic reticulum	49.43	50.39
CDY15912	Canola	endoplasmic reticulum	49.05	50.0
Os06t0715500-01	Rice	golgi, plasma membrane	47.91	49.03
HORVU7Hr1G091720.1	Barley	endoplasmic reticulum, golgi	47.15	48.63
TraesCS7D01G382700.1	Wheat	golgi	47.15	48.63
TraesCS7A01G386100.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	47.15	48.63
TraesCS7B01G289000.2	Wheat	plasma membrane	47.53	48.26
EER88961	Sorghum	endoplasmic reticulum	46.01	46.9
Zm00001d036403_P002	Maize	mitochondrion	45.25	46.12
Zm00001d014785_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	45.63	39.87

Protein Annotations

EnsemblPlants:CDY46204	EnsemblPlantsGene:GSBRNA2T00083415001	GO:A0A078IA47	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:TRAP_alpha
PANTHER:PTHR12924	PFAM:PF03896	ProteinID:CDY46204	ProteinID:CDY46204.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EE3B4F	UniProt:A0A078IA47	MapMan:35.1	:	:	:

Description

BnaA07g03660DBnaA07g03660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IA47]

Coordinates

chrLK032654:-:70408..74507

Molecular Weight (calculated)

28716.6 Da

IEP (calculated)

5.782

GRAVY (calculated)

0.122

Length

263 amino acids

Sequence
(BLAST)

001: MSWSSSTIPI IRSSTLSRSF RLPLSTCFTL LIFFPVTQVS IDLHVSDVGE DESETEQVFG LELTSAPGIE TLCVFPNNRA KIIKAGTETE VLVGMKNDGQ
101: SDVDIVAVKG SLHLPFDQKP LVQNLTALSF GNASVPVSAQ ATFPYIFAVS KFLEAGAFDL VGTIVYEMDG KPYQSIFYNG TIEVVEDGPL FRMESVFLSG
201: LLISLIVVLI IYIQNGLRHM TKKTKRATKA KVEVGTAAKD ASLDEWLEGT AYTQSSSKSK KKK

Best Arabidopsis Sequence Match ( AT2G16595.1 )
(BLAST)

001: MRTSFRLLFF AFLLLVSPFL KVALCQSDSE DSGFEVSDVG EEESDAEEVF GLELTSAPGI ETLCVFPKNS AKIIKAGVET ELLVGMKNDG QSNVDIVAVK
101: GSLHLPFDQN AVQNLTALSF SNASVPTSAQ ATLPYAFAVS KFLQAGAFDF VGTIIYEIDG KPYQSIFYNG TIEVVEDGPL FRMESVFLSG LLIFVIAFLA
201: IYIQNVLKHM TKKTKRAPKV EVGTATKDAS HDEWLEGTSY TQSSSKSKKK K

Arabidopsis Description

At2g16595 [Source:UniProtKB/TrEMBL;Acc:Q6AWS7]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.