Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 8
- vacuole 5
- plasma membrane 6
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P05650_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 84.77 | 84.77 |
| GSMUA_Achr4P19950_001 | Banana | plasma membrane | 81.64 | 82.28 |
| VIT_03s0038g01820.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 71.88 | 72.73 |
| Os06t0715500-01 | Rice | golgi, plasma membrane | 71.09 | 70.82 |
| TraesCS7D01G382700.1 | Wheat | golgi | 69.53 | 69.8 |
| TraesCS7A01G386100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 69.53 | 69.8 |
| HORVU7Hr1G091720.1 | Barley | endoplasmic reticulum, golgi | 69.53 | 69.8 |
| EER88961 | Sorghum | endoplasmic reticulum | 69.14 | 68.6 |
| TraesCS7B01G289000.2 | Wheat | plasma membrane | 69.14 | 68.34 |
| Zm00001d036403_P002 | Maize | mitochondrion | 68.75 | 68.22 |
| KRH24148 | Soybean | endoplasmic reticulum | 67.58 | 67.05 |
| KRH29113 | Soybean | endoplasmic reticulum | 67.97 | 66.67 |
| Solyc01g111150.2.1 | Tomato | plastid | 64.45 | 63.95 |
| PGSC0003DMT400004129 | Potato | plasma membrane | 63.67 | 63.18 |
| PGSC0003DMT400011347 | Potato | endoplasmic reticulum, golgi, plasma membrane | 63.67 | 62.93 |
| Solyc10g054880.1.1 | Tomato | nucleus | 62.5 | 61.78 |
| Bra030317.1-P | Field mustard | endoplasmic reticulum | 59.38 | 59.38 |
| Zm00001d014785_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 69.53 | 59.14 |
| CDX99613 | Canola | endoplasmic reticulum | 58.98 | 58.98 |
| CDY15912 | Canola | endoplasmic reticulum | 59.38 | 58.91 |
| CDX82001 | Canola | endoplasmic reticulum | 58.59 | 58.14 |
| Bra031166.1-P | Field mustard | endoplasmic reticulum | 58.59 | 58.14 |
| CDY13837 | Canola | endoplasmic reticulum | 58.2 | 57.75 |
| AT2G21160.1 | Thale cress | endoplasmic reticulum | 57.42 | 56.98 |
| AT2G16595.1 | Thale cress | endoplasmic reticulum, golgi | 53.52 | 54.58 |
| Bra001982.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 54.3 | 54.3 |
| CDX71289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 53.91 | 53.91 |
| CDY67289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 53.52 | 53.52 |
| CDY46204 | Canola | plastid | 50.78 | 49.43 |
| CDY72561 | Canola | endoplasmic reticulum | 43.36 | 45.68 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P12620_001 | EnsemblPlants:GSMUA_Achr3T12620_001 | EnsemblPlantsGene:GSMUA_Achr3G12620_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TRAP_alpha |
| PANTHER:PTHR12924 | PFAM:PF03896 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000294D892 |
| UniProt:M0SE29 | MapMan:35.1 | : | : | : | : |
Description
Translocon-associated protein subunit alpha [Source:GMGC_GENE;Acc:GSMUA_Achr3G12620_001]
Coordinates
chr3:+:9343273..9349265
Molecular Weight (calculated)
27578.1 Da
IEP (calculated)
4.478
GRAVY (calculated)
0.277
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARVFWSLI ALLLIASPIL QVVICQSDED VAATEVVEGS DLGIVGDDTQ VFGDGAFGPA PGVDTICVFP KNAARLVPAG EETELLVGLH NEGESALKVV
101: AIHASLHLPF DHHMFVQNLT LQEFYNASVP VSAQATFPYV FVVSKYLQPG TFDLVGTIVY EIDQQPYQNV FYNGTIEVIE AGGFLSIESV FLVTLGVALI
201: GFLGLWAYGQ IQQFSKKTKK PAKVEVGTGT TAADMDEWLQ GTAYAQSLSS KSKKKK
101: AIHASLHLPF DHHMFVQNLT LQEFYNASVP VSAQATFPYV FVVSKYLQPG TFDLVGTIVY EIDQQPYQNV FYNGTIEVIE AGGFLSIESV FLVTLGVALI
201: GFLGLWAYGQ IQQFSKKTKK PAKVEVGTGT TAADMDEWLQ GTAYAQSLSS KSKKKK
001: MMNLRVLFLA LLLLASPLLQ VARCQSDAED HSSLVDDVVG ENTDDAVEED DHDLDMNLSS FPGVETVCVF PKNSAKLVPA GEETELLVGL KNEGKTRVGV
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
Arabidopsis Description
Translocon-associated protein subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P45434]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.