Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 6
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G386100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 87.55 | 88.24 |
| TraesCS7D01G382700.1 | Wheat | golgi | 87.16 | 87.84 |
| HORVU7Hr1G091720.1 | Barley | endoplasmic reticulum, golgi | 87.16 | 87.84 |
| EER88961 | Sorghum | endoplasmic reticulum | 87.94 | 87.6 |
| Zm00001d036403_P002 | Maize | mitochondrion | 87.55 | 87.21 |
| TraesCS7B01G289000.2 | Wheat | plasma membrane | 87.16 | 86.49 |
| Zm00001d014785_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 88.72 | 75.75 |
| GSMUA_Achr7P05650_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 74.32 | 74.61 |
| GSMUA_Achr4P19950_001 | Banana | plasma membrane | 73.15 | 74.02 |
| GSMUA_Achr3P12620_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 70.82 | 71.09 |
| VIT_03s0038g01820.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 63.81 | 64.82 |
| PGSC0003DMT400004129 | Potato | plasma membrane | 63.03 | 62.79 |
| Solyc01g111150.2.1 | Tomato | plastid | 62.65 | 62.4 |
| PGSC0003DMT400011347 | Potato | endoplasmic reticulum, golgi, plasma membrane | 62.26 | 61.78 |
| Solyc10g054880.1.1 | Tomato | nucleus | 62.26 | 61.78 |
| KRH29113 | Soybean | endoplasmic reticulum | 61.87 | 60.92 |
| KRH24148 | Soybean | endoplasmic reticulum | 61.09 | 60.85 |
| Bra030317.1-P | Field mustard | endoplasmic reticulum | 58.75 | 58.98 |
| CDX99613 | Canola | endoplasmic reticulum | 58.75 | 58.98 |
| Bra031166.1-P | Field mustard | endoplasmic reticulum | 59.14 | 58.91 |
| CDX82001 | Canola | endoplasmic reticulum | 59.14 | 58.91 |
| CDY13837 | Canola | endoplasmic reticulum | 58.75 | 58.53 |
| CDY15912 | Canola | endoplasmic reticulum | 58.37 | 58.14 |
| AT2G21160.1 | Thale cress | endoplasmic reticulum | 57.98 | 57.75 |
| CDX71289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 51.75 | 51.95 |
| Bra001982.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 51.75 | 51.95 |
| CDY67289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 51.36 | 51.56 |
| AT2G16595.1 | Thale cress | endoplasmic reticulum, golgi | 50.19 | 51.39 |
| CDY46204 | Canola | plastid | 49.03 | 47.91 |
| CDY72561 | Canola | endoplasmic reticulum | 41.63 | 44.03 |
Protein Annotations
| MapMan:35.1 | EntrezGene:4342072 | EMBL:AK059749 | EMBL:AK060137 | EMBL:AK100782 | ProteinID:BAD53577.1 |
| ProteinID:BAF20499.1 | ProteinID:BAS99498.1 | ProteinID:EAZ38283.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006613 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:Os06g0715500 | EnsemblPlants:Os06t0715500-01 | PFAM:PF03896 | PANTHER:PTHR12924 |
| UniProt:Q5Z9P6 | SignalP:SignalP-noTM | TMHMM:TMhelix | InterPro:TRAP_alpha | UniParc:UPI0000446DC0 | RefSeq:XP_015643323.1 |
| SEG:seg | : | : | : | : | : |
Description
Similar to Translocon-associated protein alpha subunit precursor (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha). (Os06t0715500-01);Similar to Translocon-associated protein alpha subunit precursor (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha). (Os06t0715500-02);Similar to Translocon-associated protein alpha subunit precursor (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha). (Os06t0715500-03)
Coordinates
chr6:+:30371037..30374533
Molecular Weight (calculated)
27406.8 Da
IEP (calculated)
4.470
GRAVY (calculated)
0.191
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATRVWLSA LLLAFLLAAA PVVQVARAQS MEEAATAEVV DGADLGIVSD DTQVSSDGPL SPAPGVETVC VFPKNAGKIV LAGEETELLV GLQNEGESTL
101: NVVAIHSTLH LPFDHKMYGQ NLTVQNFFNA SVPVSVQATF PYTFAVSKFL QPGAYDLVGY IVYEIDQNPY QNVFYNGTVE VVEAGGLLSV ESVFLITLGV
201: ALLGLFGLWA YGQVQQLSKK TKKAPKVELG TGTTDANMDE WLEGTAFAQG SKSKKKK
101: NVVAIHSTLH LPFDHKMYGQ NLTVQNFFNA SVPVSVQATF PYTFAVSKFL QPGAYDLVGY IVYEIDQNPY QNVFYNGTVE VVEAGGLLSV ESVFLITLGV
201: ALLGLFGLWA YGQVQQLSKK TKKAPKVELG TGTTDANMDE WLEGTAFAQG SKSKKKK
001: MMNLRVLFLA LLLLASPLLQ VARCQSDAED HSSLVDDVVG ENTDDAVEED DHDLDMNLSS FPGVETVCVF PKNSAKLVPA GEETELLVGL KNEGKTRVGV
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
Arabidopsis Description
Translocon-associated protein subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P45434]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.