Factsheet for PGSC0003DMT400011347

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 8
vacuole 5
plasma membrane 7
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	endoplasmic reticulum, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g054880.1.1	Tomato	nucleus	97.3	97.3
PGSC0003DMT400004129	Potato	plasma membrane	86.87	87.21
VIT_03s0038g01820.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	73.75	75.49
KRH24148	Soybean	endoplasmic reticulum	70.66	70.93
KRH29113	Soybean	endoplasmic reticulum	70.27	69.73
GSMUA_Achr7P05650_001	Banana	endoplasmic reticulum, golgi, plasma membrane	65.25	66.02
GSMUA_Achr4P19950_001	Banana	plasma membrane	64.48	65.75
GSMUA_Achr3P12620_001	Banana	endoplasmic reticulum, golgi, plasma membrane	62.93	63.67
Os06t0715500-01	Rice	golgi, plasma membrane	61.78	62.26
CDY13837	Canola	endoplasmic reticulum	60.62	60.85
TraesCS7D01G382700.1	Wheat	golgi	59.85	60.78
TraesCS7A01G386100.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	59.85	60.78
HORVU7Hr1G091720.1	Barley	endoplasmic reticulum, golgi	59.85	60.78
Bra031166.1-P	Field mustard	endoplasmic reticulum	59.85	60.08
CDX82001	Canola	endoplasmic reticulum	59.85	60.08
EER88961	Sorghum	endoplasmic reticulum	59.85	60.08
TraesCS7B01G289000.2	Wheat	plasma membrane	59.85	59.85
Bra001982.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	59.07	59.77
Zm00001d036403_P002	Maize	mitochondrion	59.46	59.69
CDX71289	Canola	endoplasmic reticulum, golgi, plasma membrane	58.69	59.38
CDY67289	Canola	endoplasmic reticulum, golgi, plasma membrane	58.3	58.98
CDX99613	Canola	endoplasmic reticulum	58.3	58.98
Bra030317.1-P	Field mustard	endoplasmic reticulum	58.3	58.98
AT2G16595.1	Thale cress	endoplasmic reticulum, golgi	56.76	58.57
CDY15912	Canola	endoplasmic reticulum	57.92	58.14
AT2G21160.1	Thale cress	endoplasmic reticulum	57.53	57.75
CDY46204	Canola	plastid	54.44	53.61
Zm00001d014785_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	59.46	51.16
CDY72561	Canola	endoplasmic reticulum	45.56	48.56

Protein Annotations

EnsemblPlants:PGSC0003DMT400011347	EnsemblPlantsGene:PGSC0003DMG400004442	EntrezGene:102601148	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:TRAP_alpha
PANTHER:PTHR12924	PFAM:PF03896	PGSC:PGSC0003DMG400004442	RefSeq:XP_006367333.1	SEG:seg	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0002949D6F	UniProt:M0ZZF4	MapMan:35.1	:	:

Description

Translocon-associated protein, alpha subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400004442]

Coordinates

chr10:+:46423753..46428129

Molecular Weight (calculated)

27991.3 Da

IEP (calculated)

4.491

GRAVY (calculated)

0.093

Length

259 amino acids

Sequence
(BLAST)

001: MSIRVFSVFL ALILFSSSFL QVARCQSDPE TDVVEGTGEA GDLGIVNDDV QDFGSDSFSP APGIETVCVF PKNPSKVVAA GEESELLVGM KNDGDSSLNI
101: IAIQASVHLP FDHRYLVQNL SVQAFNNATV PPSAQATFPY IFAVSKFMQP GSFDLVGIIV YEIDQNPFQS TFYNGTIEVT EPGGLLSVES VFLFCLGIAL
201: LVLLGFWIRG QIQNLSKKTK RAPKAKVEVG TATTDASTDE WLEGTAYSQS LSNKSKKKK

Best Arabidopsis Sequence Match ( AT2G21160.1 )
(BLAST)

001: MMNLRVLFLA LLLLASPLLQ VARCQSDAED HSSLVDDVVG ENTDDAVEED DHDLDMNLSS FPGVETVCVF PKNSAKLVPA GEETELLVGL KNEGKTRVGV
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN

Arabidopsis Description

Translocon-associated protein subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P45434]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.