Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 8
- vacuole 5
- plasma membrane 6
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH24148 | Soybean | endoplasmic reticulum | 76.68 | 75.19 |
| KRH29113 | Soybean | endoplasmic reticulum | 76.68 | 74.33 |
| PGSC0003DMT400011347 | Potato | endoplasmic reticulum, golgi, plasma membrane | 75.49 | 73.75 |
| Solyc10g054880.1.1 | Tomato | nucleus | 74.7 | 72.97 |
| GSMUA_Achr7P05650_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 73.52 | 72.66 |
| GSMUA_Achr3P12620_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 72.73 | 71.88 |
| Solyc01g111150.2.1 | Tomato | plastid | 73.12 | 71.71 |
| PGSC0003DMT400004129 | Potato | plasma membrane | 72.73 | 71.32 |
| GSMUA_Achr4P19950_001 | Banana | plasma membrane | 69.57 | 69.29 |
| Os06t0715500-01 | Rice | golgi, plasma membrane | 64.82 | 63.81 |
| Zm00001d036403_P002 | Maize | mitochondrion | 64.82 | 63.57 |
| EER88961 | Sorghum | endoplasmic reticulum | 64.43 | 63.18 |
| TraesCS7D01G382700.1 | Wheat | golgi | 62.85 | 62.35 |
| HORVU7Hr1G091720.1 | Barley | endoplasmic reticulum, golgi | 62.85 | 62.35 |
| TraesCS7A01G386100.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 62.85 | 62.35 |
| TraesCS7B01G289000.2 | Wheat | plasma membrane | 62.85 | 61.39 |
| CDX82001 | Canola | endoplasmic reticulum | 62.45 | 61.24 |
| CDX99613 | Canola | endoplasmic reticulum | 61.66 | 60.94 |
| Bra001982.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 61.66 | 60.94 |
| CDY13837 | Canola | endoplasmic reticulum | 62.06 | 60.85 |
| Bra031166.1-P | Field mustard | endoplasmic reticulum | 62.06 | 60.85 |
| Bra030317.1-P | Field mustard | endoplasmic reticulum | 61.26 | 60.55 |
| CDX71289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 60.87 | 60.16 |
| CDY67289 | Canola | endoplasmic reticulum, golgi, plasma membrane | 60.47 | 59.77 |
| CDY15912 | Canola | endoplasmic reticulum | 60.87 | 59.69 |
| AT2G21160.1 | Thale cress | endoplasmic reticulum | 60.87 | 59.69 |
| AT2G16595.1 | Thale cress | endoplasmic reticulum, golgi | 58.89 | 59.36 |
| Zm00001d014785_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 64.82 | 54.49 |
| CDY46204 | Canola | plastid | 54.94 | 52.85 |
| CDY72561 | Canola | endoplasmic reticulum | 48.22 | 50.21 |
Protein Annotations
| EntrezGene:100250330 | wikigene:100250330 | MapMan:35.1 | UniProt:A5BQP3 | EMBL:AM467727 | ProteinID:CAN77171 |
| ProteinID:CAN77171.1 | ProteinID:CBI37920 | ProteinID:CBI37920.3 | EMBL:FN596508 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006613 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100250330 | wikigene:LOC100250330 | PFAM:PF03896 |
| PANTHER:PTHR12924 | SignalP:SignalP-noTM | TIGR:TC58158 | TIGR:TC58505 | TMHMM:TMhelix | InterPro:TRAP_alpha |
| UniParc:UPI000152167D | ArrayExpress:VIT_03s0038g01820 | EnsemblPlantsGene:VIT_03s0038g01820 | EnsemblPlants:VIT_03s0038g01820.t01 | RefSeq:XP_002275216 | RefSeq:XP_002275216.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:1275024..1279206
Molecular Weight (calculated)
27244.5 Da
IEP (calculated)
4.657
GRAVY (calculated)
0.175
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIRVFFLAF LLLCSPFLQV ARCQSEVEVS EAAEEGGDLG IVGEDAQDFG DGSFSPAPGV DTVCVFPKNS ARLVTAGEEA ELLVGMKNDG ESSLNVIAVK
101: ASVHLPFNHQ LLVQNLSTQG FNNASVPASA QATFPYIFAV SKYLQPGTFD LVGTIVYEID QHPYQSVFYN GTIEVVEAGG FVSIESVFLV FLGIALLVFF
201: GVWIRGQIQN LSKKTKRAPK VEVGTGTTDA SLDEWLQGTA YTQSLSSKSK KKK
101: ASVHLPFNHQ LLVQNLSTQG FNNASVPASA QATFPYIFAV SKYLQPGTFD LVGTIVYEID QHPYQSVFYN GTIEVVEAGG FVSIESVFLV FLGIALLVFF
201: GVWIRGQIQN LSKKTKRAPK VEVGTGTTDA SLDEWLQGTA YTQSLSSKSK KKK
001: MMNLRVLFLA LLLLASPLLQ VARCQSDAED HSSLVDDVVG ENTDDAVEED DHDLDMNLSS FPGVETVCVF PKNSAKLVPA GEETELLVGL KNEGKTRVGV
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
101: MGIRASVHLP YDHKLLVQNL TMLRLNNASI PTSLQATFPY IFAVSQYLQP GAFDLVGYII YDVEGKPYQS VFYNGTIEVV ESGGLLSGES VFLLTLGIGL
201: LLLLGLWAYS QVQRLTKKTK KVSKVEVGTR STEASLDEWL EGTTLAKTSS GKTKNKKN
Arabidopsis Description
Translocon-associated protein subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P45434]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.