Factsheet for Solyc01g111150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 5
endoplasmic reticulum 8
vacuole 5
plasma membrane 6
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004129	Potato	plasma membrane	98.06	98.06
Solyc10g054880.1.1	Tomato	nucleus	85.66	85.33
VIT_03s0038g01820.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	71.71	73.12
KRH24148	Soybean	endoplasmic reticulum	68.22	68.22
KRH29113	Soybean	endoplasmic reticulum	67.83	67.05
GSMUA_Achr4P19950_001	Banana	plasma membrane	65.5	66.54
GSMUA_Achr7P05650_001	Banana	endoplasmic reticulum, golgi, plasma membrane	63.95	64.45
GSMUA_Achr3P12620_001	Banana	endoplasmic reticulum, golgi, plasma membrane	63.95	64.45
Os06t0715500-01	Rice	golgi, plasma membrane	62.4	62.65
TraesCS7D01G382700.1	Wheat	golgi	61.24	61.96
TraesCS7A01G386100.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	61.24	61.96
HORVU7Hr1G091720.1	Barley	endoplasmic reticulum, golgi	61.24	61.96
TraesCS7B01G289000.2	Wheat	plasma membrane	61.24	61.0
EER88961	Sorghum	endoplasmic reticulum	60.85	60.85
Zm00001d036403_P002	Maize	mitochondrion	60.47	60.47
CDY13837	Canola	endoplasmic reticulum	57.36	57.36
CDX82001	Canola	endoplasmic reticulum	56.98	56.98
Bra031166.1-P	Field mustard	endoplasmic reticulum	56.98	56.98
CDX99613	Canola	endoplasmic reticulum	56.2	56.64
CDX71289	Canola	endoplasmic reticulum, golgi, plasma membrane	56.2	56.64
Bra030317.1-P	Field mustard	endoplasmic reticulum	56.2	56.64
Bra001982.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	56.2	56.64
CDY67289	Canola	endoplasmic reticulum, golgi, plasma membrane	55.81	56.25
CDY15912	Canola	endoplasmic reticulum	56.2	56.2
AT2G16595.1	Thale cress	endoplasmic reticulum, golgi	53.88	55.38
AT2G21160.1	Thale cress	endoplasmic reticulum	54.65	54.65
Zm00001d014785_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	60.47	51.83
CDY46204	Canola	plastid	51.55	50.57
CDY72561	Canola	endoplasmic reticulum	43.8	46.5

Protein Annotations

EnsemblPlants:Solyc01g111150.2.1	EnsemblPlantsGene:Solyc01g111150.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0006613	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	InterPro:TRAP_alpha	PANTHER:PTHR12924	PFAM:PF03896	SEG:seg	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0002767540	UniProt:K4B3X8	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1:+:97513182..97517644

Molecular Weight (calculated)

27952.3 Da

IEP (calculated)

4.597

GRAVY (calculated)

0.071

Length

258 amino acids

Sequence
(BLAST)

001: MEIRVFCVLA LLLFSSSFLQ VARSQSDPAV EVVEGTEEAG DLGIVGDDVQ DFSSESYTPA AGVETICVFP KNPSKVVAAG EESELLVGMK NDGESHLNII
101: AIQASVHLPF DHRYLVQNLS VQAFNNATVP PSAQATFPYI FAVSKFMQPG SFDLVGTIVY EIDQNAYQNV FYNGTIEVTE PGGLLSVESV FLFCLAVALL
201: GLLGFWIRGQ IQNLSKKTKR APKAKVEVGT ATTDASTDEW LQGTAYSQSQ ANKLKKKK

Best Arabidopsis Sequence Match ( AT2G16595.1 )
(BLAST)

001: MRTSFRLLFF AFLLLVSPFL KVALCQSDSE DSGFEVSDVG EEESDAEEVF GLELTSAPGI ETLCVFPKNS AKIIKAGVET ELLVGMKNDG QSNVDIVAVK
101: GSLHLPFDQN AVQNLTALSF SNASVPTSAQ ATLPYAFAVS KFLQAGAFDF VGTIIYEIDG KPYQSIFYNG TIEVVEDGPL FRMESVFLSG LLIFVIAFLA
201: IYIQNVLKHM TKKTKRAPKV EVGTATKDAS HDEWLEGTSY TQSSSKSKKK K

Arabidopsis Description

At2g16595 [Source:UniProtKB/TrEMBL;Acc:Q6AWS7]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.