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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 8
  • vacuole 5
  • plasma membrane 6
  • golgi 6
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:endoplasmic reticulum
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:endoplasmic reticulum
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH29113 Soybean endoplasmic reticulum 95.35 94.25
VIT_03s0038g01820.t01 Wine grape endoplasmic reticulum, golgi, plasma membrane 75.19 76.68
PGSC0003DMT400011347 Potato endoplasmic reticulum, golgi, plasma membrane 70.93 70.66
Solyc10g054880.1.1 Tomato nucleus 69.38 69.11
GSMUA_Achr7P05650_001 Banana endoplasmic reticulum, golgi, plasma membrane 68.22 68.75
Solyc01g111150.2.1 Tomato plastid 68.22 68.22
PGSC0003DMT400004129 Potato plasma membrane 67.83 67.83
GSMUA_Achr3P12620_001 Banana endoplasmic reticulum, golgi, plasma membrane 67.05 67.58
GSMUA_Achr4P19950_001 Banana plasma membrane 64.34 65.35
Os06t0715500-01 Rice golgi, plasma membrane 60.85 61.09
AT2G16595.1 Thale cress endoplasmic reticulum, golgi 58.91 60.56
CDY13837 Canola endoplasmic reticulum 60.47 60.47
CDX82001 Canola endoplasmic reticulum 60.08 60.08
Bra031166.1-P Field mustard endoplasmic reticulum 60.08 60.08
CDX99613 Canola endoplasmic reticulum 58.91 59.38
Bra030317.1-P Field mustard endoplasmic reticulum 58.91 59.38
Zm00001d036403_P002 Maize mitochondrion 59.3 59.3
EER88961 Sorghum endoplasmic reticulum 59.3 59.3
CDX71289 Canola endoplasmic reticulum, golgi, plasma membrane 58.53 58.98
Bra001982.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 58.53 58.98
CDY15912 Canola endoplasmic reticulum 58.91 58.91
CDY67289 Canola endoplasmic reticulum, golgi, plasma membrane 58.14 58.59
HORVU7Hr1G091720.1 Barley endoplasmic reticulum, golgi 57.36 58.04
TraesCS7A01G386100.1 Wheat endoplasmic reticulum, golgi, plasma membrane 57.36 58.04
TraesCS7D01G382700.1 Wheat golgi 57.36 58.04
AT2G21160.1 Thale cress endoplasmic reticulum 57.75 57.75
TraesCS7B01G289000.2 Wheat plasma membrane 57.36 57.14
CDY46204 Canola plastid 53.88 52.85
Zm00001d014785_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 58.91 50.5
CDY72561 Canola endoplasmic reticulum 46.9 49.79
Protein Annotations
EntrezGene:100820543MapMan:35.1EMBL:ACUP02007171EMBL:BT093433UniProt:C6T7K0EnsemblPlantsGene:GLYMA_12G024500
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0006613GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021EnsemblPlants:KRH24148
ProteinID:KRH24148ProteinID:KRH24148.1PFAM:PF03896PANTHER:PTHR12924SignalP:SignalP-noTMTMHMM:TMhelix
InterPro:TRAP_alphaUniParc:UPI0001B15ADESEG:seg:::
Description
hypothetical protein
Coordinates
chr12:+:1773055..1777092
Molecular Weight (calculated)
27780.1 Da
IEP (calculated)
4.605
GRAVY (calculated)
0.129
Length
258 amino acids
Sequence
(BLAST)
001: MACIDKFWVF ALALLLLASP LLQVARCQSD SDDVVEAAEE SGDIGIVGDD VQDFGDGTFP SAPGIETISV FPKNSARLIT AGEESELLVG VKNDGDSSLN
101: VIAIKASVHL PFDHRMLVQN LTAQGFNNGS VPASAQATFP YLFAVSKFLQ SGTFDLVGTI IYEIDEHPFQ STFFNGTVEV VESGAFLSME SVFLVTLGVA
201: LLVLLGLWIH GQIQHLSKKT KRAPKVEVGT RTTDASTDEW LQGTAYTQSM SSKSKKKK
Best Arabidopsis Sequence Match ( AT2G16595.1 )
(BLAST)
001: MRTSFRLLFF AFLLLVSPFL KVALCQSDSE DSGFEVSDVG EEESDAEEVF GLELTSAPGI ETLCVFPKNS AKIIKAGVET ELLVGMKNDG QSNVDIVAVK
101: GSLHLPFDQN AVQNLTALSF SNASVPTSAQ ATLPYAFAVS KFLQAGAFDF VGTIIYEIDG KPYQSIFYNG TIEVVEDGPL FRMESVFLSG LLIFVIAFLA
201: IYIQNVLKHM TKKTKRAPKV EVGTATKDAS HDEWLEGTSY TQSSSKSKKK K
Arabidopsis Description
At2g16595 [Source:UniProtKB/TrEMBL;Acc:Q6AWS7]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.