Factsheet for Solyc12g008720.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000921	Potato	cytosol	100.0	100.0
Solyc05g008010.2.1	Tomato	cytosol, nucleus, unclear	93.33	93.33
KRH74177	Soybean	cytosol	87.5	87.5
KRH60160	Soybean	cytosol	87.5	87.5
KRH49031	Soybean	endoplasmic reticulum	87.5	87.5
HORVU5Hr1G052980.2	Barley	cytosol	87.5	86.78
KRH41451	Soybean	cytosol, endoplasmic reticulum	86.67	86.67
AT4G26230.1	Thale cress	cytosol	85.0	85.71
CDY41796	Canola	cytosol	85.0	85.71
CDY32877	Canola	cytosol	85.0	85.71
CDY32765	Canola	cytosol	85.0	85.71
CDY20712	Canola	cytosol	85.0	85.71
CDY11907	Canola	cytosol	85.0	85.71
CDX88585	Canola	cytosol	85.0	85.71
Bra035629.1-P	Field mustard	cytosol	85.0	85.71
Bra026455.1-P	Field mustard	cytosol	85.0	85.71
Bra002798.1-P	Field mustard	cytosol	85.0	85.71
GSMUA_Achr6P03460_001	Banana	cytosol	85.83	85.12
CDY50008	Canola	cytosol	85.0	85.0
CDX81941	Canola	cytosol	84.17	84.87
CDX89354	Canola	cytosol	84.17	84.87
CDX94356	Canola	cytosol	84.17	84.87
Bra031094.1-P	Field mustard	cytosol	84.17	84.87
AT5G56710.1	Thale cress	cytosol	84.17	84.87
AT2G19740.1	Thale cress	cytosol	84.17	84.87
GSMUA_Achr3P03830_001	Banana	cytosol	85.0	84.3
CDY48721	Canola	cytosol	83.33	84.03
CDY21651	Canola	cytosol	83.33	84.03
CDY03347	Canola	cytosol	83.33	84.03
CDX82718	Canola	cytosol	83.33	84.03
Bra036709.1-P	Field mustard	cytosol	83.33	84.03
Bra010436.1-P	Field mustard	cytosol	81.67	83.76
CDY14309	Canola	cytosol	76.67	83.64
EES05621	Sorghum	cytosol	85.0	82.93
CDY26343	Canola	cytosol	81.67	82.35
GSMUA_Achr9P12560_001	Banana	cytosol	81.67	81.67
Os06t0319700-01	Rice	cytosol, nucleus, plasma membrane, plastid	84.17	81.45
Zm00001d045889_P002	Maize	cytosol, extracellular	84.17	81.45
EES15405	Sorghum	cytosol	82.5	81.15
Bra006860.1-P	Field mustard	cytosol	80.0	80.67
Os08t0505300-00	Rice	plasma membrane	44.17	80.3
TraesCS7A01G244800.1	Wheat	cytosol	80.83	79.51
TraesCS7B01G146600.1	Wheat	cytosol, unclear	80.83	79.51
TraesCS7D01G243500.1	Wheat	cytosol	80.83	79.51
Bra038580.1-P	Field mustard	cytosol	47.5	79.17
Zm00001d051662_P001	Maize	cytosol	81.67	77.17
VIT_11s0016g02650.t01	Wine grape	cytosol	94.17	74.34
KRH66370	Soybean	cytosol	42.5	70.83
TraesCS6B01G310100.1	Wheat	cytosol, unclear	66.67	65.04
TraesCS6D01G262100.1	Wheat	cytosol	66.67	65.04
Zm00001d017850_P001	Maize	cytosol, extracellular, mitochondrion	66.67	65.04
Bra039016.1-P	Field mustard	nucleus	50.83	52.14
KRH63209	Soybean	cytosol	36.67	38.6

Protein Annotations

MapMan:17.1.2.1.32	Gene3D:3.10.440.10	GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	InterPro:IPR023621	UniProt:K4DBW0	PFAM:PD006030	PFAM:PF01198	ScanProsite:PS01144
PANTHER:PTHR10956	PANTHER:PTHR10956:SF22	InterPro:Ribosomal_L31e	InterPro:Ribosomal_L31e_CS	InterPro:Ribosomal_L31e_dom_sf	SMART:SM01380
SUPFAM:SSF54575	EnsemblPlantsGene:Solyc12g008720.1	EnsemblPlants:Solyc12g008720.1.1	UniParc:UPI000276957D	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:2087594..2089246

Molecular Weight (calculated)

13873.0 Da

IEP (calculated)

10.671

GRAVY (calculated)

-0.787

Length

120 amino acids

Sequence
(BLAST)

001: MVEKTKGRKE EVVSREYTIN LHKRLHGCTF KKKAPTAIKE IRKFAQKAMG TKDVRVDVKL NKQIWSRGIR SVPRRIRVRI ARKRNDDEDA KEELYSLVTV
101: AEIPAEGLKG LGTKIIEDEE

Best Arabidopsis Sequence Match ( AT2G19740.1 )
(BLAST)

001: MEKGKGRKEE VVTREYTINL HRRLHSCTFK KKAPNAIKEI RKFALKAMGT KDVRVDVKLN KQIWSKGIRG PPRRIRVRVA RKRNDDEDAK EEFFSLVTVA
101: EIPAEGLSGL GTKVIEEEE

Arabidopsis Description

RPL31A60S ribosomal protein L31-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.