CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88585	Canola	cytosol	100.0	100.0
CDY11907	Canola	cytosol	100.0	100.0
CDY20712	Canola	cytosol	100.0	100.0
CDY32765	Canola	cytosol	100.0	100.0
CDY41796	Canola	cytosol	100.0	100.0
CDX89354	Canola	cytosol	99.16	99.16
CDX94356	Canola	cytosol	99.16	99.16
CDY50008	Canola	cytosol	99.16	98.33
AT5G56710.1	Thale cress	cytosol	96.64	96.64
CDY14309	Canola	cytosol	89.08	96.36
CDX82718	Canola	cytosol	92.44	92.44
CDY03347	Canola	cytosol	92.44	92.44
CDY21651	Canola	cytosol	92.44	92.44
CDY48721	Canola	cytosol	92.44	92.44
CDX81941	Canola	cytosol	90.76	90.76
CDY26343	Canola	cytosol	90.76	90.76
Solyc12g008720.1.1	Tomato	nucleus	85.71	85.0
PGSC0003DMT400000921	Potato	cytosol	85.71	85.0
PGSC0003DMT400078454	Potato	cytosol	84.03	83.33
KRH74177	Soybean	cytosol	84.03	83.33
KRH49031	Soybean	endoplasmic reticulum	84.03	83.33
KRH60160	Soybean	cytosol	84.03	83.33
Solyc05g008010.2.1	Tomato	cytosol, nucleus, unclear	83.19	82.5
KRH41451	Soybean	cytosol, endoplasmic reticulum	83.19	82.5
HORVU5Hr1G052980.2	Barley	cytosol	83.19	81.82
GSMUA_Achr6P03460_001	Banana	cytosol	83.19	81.82
GSMUA_Achr3P03830_001	Banana	cytosol	82.35	80.99
GSMUA_Achr9P12560_001	Banana	cytosol	80.67	80.0
Os08t0505300-00	Rice	plasma membrane	42.86	77.27
EES15405	Sorghum	cytosol	78.99	77.05
EES05621	Sorghum	cytosol	78.99	76.42
Zm00001d045889_P002	Maize	cytosol, extracellular	76.47	73.39
TraesCS7A01G244800.1	Wheat	cytosol	74.79	72.95
TraesCS7B01G146600.1	Wheat	cytosol, unclear	74.79	72.95
TraesCS7D01G243500.1	Wheat	cytosol	74.79	72.95
Os06t0319700-01	Rice	cytosol, nucleus, plasma membrane, plastid	75.63	72.58
Zm00001d051662_P001	Maize	cytosol	77.31	72.44
VIT_11s0016g02650.t01	Wine grape	cytosol	86.55	67.76
KRH66370	Soybean	cytosol	40.34	66.67
TraesCS6D01G262100.1	Wheat	cytosol	61.34	59.35
Zm00001d017850_P001	Maize	cytosol, extracellular, mitochondrion	61.34	59.35
TraesCS6B01G310100.1	Wheat	cytosol, unclear	61.34	59.35
KRH63209	Soybean	cytosol	36.13	37.72

Protein Annotations

MapMan:17.1.2.1.32	Gene3D:3.10.440.10	GO:A0A078FFY7	UniProt:A0A078FFY7	ProteinID:CDY11907.1	ProteinID:CDY20712.1
ProteinID:CDY32765.1	EnsemblPlants:CDY32877	ProteinID:CDY32877	ProteinID:CDY32877.1	ProteinID:CDY41796.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00053007001	InterPro:IPR023621	PFAM:PD006030	PFAM:PF01198	ScanProsite:PS01144
PANTHER:PTHR10956	PANTHER:PTHR10956:SF22	InterPro:Ribosomal_L31e	InterPro:Ribosomal_L31e_CS	InterPro:Ribosomal_L31e_dom_sf	SMART:SM01380
SUPFAM:SSF54575	UniParc:UPI0002544A32	SEG:seg	:	:	:

Description

BnaC09g33240DBnaA02g08520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFY7]

Coordinates

chrLK032301:-:171625..172683

Molecular Weight (calculated)

13762.7 Da

IEP (calculated)

10.691

GRAVY (calculated)

-0.863

Length

119 amino acids

Sequence
(BLAST)

001: MSEKKGRKEE VVTREYTINL HRRLHSCTFK KKAPKAIKEI RKFAEKAMGT KDVRVDVKLN KQIWSRGIRG PPRRIRVRVA RKRNDDEDAK EEFFSLVTVA
101: EIPAEGLSGL GTKVIDEED

Best Arabidopsis Sequence Match ( AT5G56710.1 )
(BLAST)

001: MSEKKGRKEE VITREYTINL HRRLHKCTFK KKAPKAIKEI RKFAEKAMGT KDVRVDVKLN KQIWSKGIRG PPRRIRVRVA RKRNDDEDAK EEFFSLVTVA
101: EIPAEGLSGL GTKVIEEED

Arabidopsis Description

RPL31C60S ribosomal protein L31-3 [Source:UniProtKB/Swiss-Prot;Acc:P51420]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.