Factsheet for Os06t0319700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045889_P002	Maize	cytosol, extracellular	93.55	93.55
Os08t0505300-00	Rice	plasma membrane	45.97	86.36
Solyc12g008720.1.1	Tomato	nucleus	81.45	84.17
Solyc05g008010.2.1	Tomato	cytosol, nucleus, unclear	81.45	84.17
PGSC0003DMT400000921	Potato	cytosol	81.45	84.17
VIT_13s0064g01240.t01	Wine grape	cytosol	81.45	83.47
GSMUA_Achr3P03830_001	Banana	cytosol	81.45	83.47
GSMUA_Achr6P03460_001	Banana	cytosol	81.45	83.47
PGSC0003DMT400078454	Potato	cytosol	80.65	83.33
GSMUA_Achr9P12560_001	Banana	cytosol	79.84	82.5
KRH60160	Soybean	cytosol	77.42	80.0
KRH49031	Soybean	endoplasmic reticulum	77.42	80.0
KRH74177	Soybean	cytosol	77.42	80.0
KRH41451	Soybean	cytosol, endoplasmic reticulum	76.61	79.17
CDX81941	Canola	cytosol	75.81	78.99
Bra031094.1-P	Field mustard	cytosol	75.81	78.99
CDX82718	Canola	cytosol	75.0	78.15
CDY03347	Canola	cytosol	75.0	78.15
CDY48721	Canola	cytosol	75.0	78.15
CDY21651	Canola	cytosol	75.0	78.15
Bra036709.1-P	Field mustard	cytosol	74.19	77.31
CDY26343	Canola	cytosol	73.39	76.47
AT2G19740.1	Thale cress	cytosol	73.39	76.47
CDY32765	Canola	cytosol	72.58	75.63
AT4G26230.1	Thale cress	cytosol	72.58	75.63
AT5G56710.1	Thale cress	cytosol	72.58	75.63
Bra002798.1-P	Field mustard	cytosol	72.58	75.63
Bra026455.1-P	Field mustard	cytosol	72.58	75.63
Bra035629.1-P	Field mustard	cytosol	72.58	75.63
CDX88585	Canola	cytosol	72.58	75.63
CDY11907	Canola	cytosol	72.58	75.63
CDY20712	Canola	cytosol	72.58	75.63
CDY41796	Canola	cytosol	72.58	75.63
CDY32877	Canola	cytosol	72.58	75.63
CDX94356	Canola	cytosol	71.77	74.79
CDX89354	Canola	cytosol	71.77	74.79
CDY50008	Canola	cytosol	71.77	74.17
Bra010436.1-P	Field mustard	cytosol	68.55	72.65
CDY14309	Canola	cytosol	63.71	71.82
Bra006860.1-P	Field mustard	cytosol	68.55	71.43
Bra038580.1-P	Field mustard	cytosol	41.13	70.83
VIT_11s0016g02650.t01	Wine grape	cytosol	81.45	66.45
KRH66370	Soybean	cytosol	36.29	62.5
Bra039016.1-P	Field mustard	nucleus	46.77	49.57
KRH63209	Soybean	cytosol	34.68	37.72

Protein Annotations

MapMan:17.1.2.1.32	Gene3D:3.10.440.10	EntrezGene:4340887	ProteinID:BAD61612.1	ProteinID:BAF19422.1	ProteinID:BAS97494.1
ProteinID:EAZ36810.1	GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
InterPro:IPR023621	EnsemblPlantsGene:Os06g0319700	EnsemblPlants:Os06t0319700-01	PFAM:PD006030	PFAM:PF01198	PANTHER:PTHR10956
PANTHER:PTHR10956:SF22	UniProt:Q5Z9Z8	InterPro:Ribosomal_L31e	InterPro:Ribosomal_L31e_dom_sf	SMART:SM01380	SUPFAM:SSF54575
UniParc:UPI00004505FE	RefSeq:XP_015640972.1	SEG:seg	:	:	:

Description

Similar to 60S ribosomal protein L31. (Os06t0319700-01)

Coordinates

chr6:+:12412530..12415341

Molecular Weight (calculated)

14234.3 Da

IEP (calculated)

10.655

GRAVY (calculated)

-0.824

Length

124 amino acids

Sequence
(BLAST)

001: MAEKKQRPGG ARKDEVVTRE YTINLHKRLH GCTFKKKAPN AIKEIRKFAQ KAMGTIDVRV DVKLNKHIWS SGIRSVPRRV RVRIARRRND EEDAKEELYS
101: LVTVAEVPQE GLKGLGTKLV EDDE

Best Arabidopsis Sequence Match ( AT2G19740.1 )
(BLAST)

001: MEKGKGRKEE VVTREYTINL HRRLHSCTFK KKAPNAIKEI RKFALKAMGT KDVRVDVKLN KQIWSKGIRG PPRRIRVRVA RKRNDDEDAK EEFFSLVTVA
101: EIPAEGLSGL GTKVIEEEE

Arabidopsis Description

RPL31A60S ribosomal protein L31-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.