Factsheet for PGSC0003DMT400078454

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008010.2.1	Tomato	cytosol, nucleus, unclear	99.17	99.17
PGSC0003DMT400000921	Potato	cytosol	92.5	92.5
HORVU5Hr1G052980.2	Barley	cytosol	87.5	86.78
GSMUA_Achr6P03460_001	Banana	cytosol	86.67	85.95
KRH74177	Soybean	cytosol	85.83	85.83
KRH60160	Soybean	cytosol	85.83	85.83
KRH49031	Soybean	endoplasmic reticulum	85.83	85.83
GSMUA_Achr3P03830_001	Banana	cytosol	85.83	85.12
CDY50008	Canola	cytosol	85.0	85.0
KRH41451	Soybean	cytosol, endoplasmic reticulum	85.0	85.0
Os08t0505300-00	Rice	plasma membrane	46.67	84.85
EES05621	Sorghum	cytosol	86.67	84.55
CDY41796	Canola	cytosol	83.33	84.03
CDY32877	Canola	cytosol	83.33	84.03
CDY32765	Canola	cytosol	83.33	84.03
AT4G26230.1	Thale cress	cytosol	83.33	84.03
CDY20712	Canola	cytosol	83.33	84.03
CDY11907	Canola	cytosol	83.33	84.03
CDX88585	Canola	cytosol	83.33	84.03
Bra035629.1-P	Field mustard	cytosol	83.33	84.03
Bra026455.1-P	Field mustard	cytosol	83.33	84.03
Bra002798.1-P	Field mustard	cytosol	83.33	84.03
Bra010436.1-P	Field mustard	cytosol	81.67	83.76
CDY14309	Canola	cytosol	76.67	83.64
CDX94356	Canola	cytosol	82.5	83.19
CDX89354	Canola	cytosol	82.5	83.19
AT5G56710.1	Thale cress	cytosol	82.5	83.19
EES15405	Sorghum	cytosol	84.17	82.79
CDX81941	Canola	cytosol	81.67	82.35
Bra031094.1-P	Field mustard	cytosol	81.67	82.35
GSMUA_Achr9P12560_001	Banana	cytosol	81.67	81.67
CDY48721	Canola	cytosol	80.83	81.51
AT2G19740.1	Thale cress	cytosol	80.83	81.51
CDY21651	Canola	cytosol	80.83	81.51
CDY03347	Canola	cytosol	80.83	81.51
CDX82718	Canola	cytosol	80.83	81.51
Bra036709.1-P	Field mustard	cytosol	80.83	81.51
Zm00001d045889_P002	Maize	cytosol, extracellular	84.17	81.45
Os06t0319700-01	Rice	cytosol, nucleus, plasma membrane, plastid	83.33	80.65
CDY26343	Canola	cytosol	79.17	79.83
Bra006860.1-P	Field mustard	cytosol	79.17	79.83
Zm00001d051662_P001	Maize	cytosol	84.17	79.53
TraesCS7A01G244800.1	Wheat	cytosol	80.0	78.69
TraesCS7B01G146600.1	Wheat	cytosol, unclear	80.0	78.69
TraesCS7D01G243500.1	Wheat	cytosol	80.0	78.69
Bra038580.1-P	Field mustard	cytosol	45.0	75.0
VIT_11s0016g02650.t01	Wine grape	cytosol	91.67	72.37
KRH66370	Soybean	cytosol	42.5	70.83
Zm00001d017850_P001	Maize	cytosol, extracellular, mitochondrion	68.33	66.67
TraesCS6B01G310100.1	Wheat	cytosol, unclear	67.5	65.85
TraesCS6D01G262100.1	Wheat	cytosol	67.5	65.85
Bra039016.1-P	Field mustard	nucleus	48.33	49.57
KRH63209	Soybean	cytosol	35.83	37.72

Protein Annotations

EntrezGene:102584366	MapMan:17.1.2.1.32	Gene3D:3.10.440.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023621
UniProt:M1D054	PFAM:PD006030	PFAM:PF01198	EnsemblPlantsGene:PGSC0003DMG400030537	PGSC:PGSC0003DMG400030537	EnsemblPlants:PGSC0003DMT400078454
ScanProsite:PS01144	PANTHER:PTHR10956	PANTHER:PTHR10956:SF22	InterPro:Ribosomal_L31e	InterPro:Ribosomal_L31e_CS	InterPro:Ribosomal_L31e_dom_sf
SMART:SM01380	SUPFAM:SSF54575	UniParc:UPI000294E9B6	RefSeq:XP_006344242.1	SEG:seg	:

Description

60S ribosomal protein L31 [Source:PGSC_GENE;Acc:PGSC0003DMG400030537]

Coordinates

chr5:+:4332002..4334879

Molecular Weight (calculated)

13868.9 Da

IEP (calculated)

10.671

GRAVY (calculated)

-0.813

Length

120 amino acids

Sequence
(BLAST)

001: MSDKTKGRKE EVVTREYTIN LHKRLHGCTF KKKAPTAIKE IRKFAVKAMG TKDVRVDVKL NKHIWSRGIR SVPRRVRVRI ARKRNDDEDA KEELYSLVTV
101: TEIPPEGLKG LGTKIIEDED

Best Arabidopsis Sequence Match ( AT2G19740.1 )
(BLAST)

001: MEKGKGRKEE VVTREYTINL HRRLHSCTFK KKAPNAIKEI RKFALKAMGT KDVRVDVKLN KQIWSKGIRG PPRRIRVRVA RKRNDDEDAK EEFFSLVTVA
101: EIPAEGLSGL GTKVIEEEE

Arabidopsis Description

RPL31A60S ribosomal protein L31-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.