Factsheet for VIT_11s0016g02650.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g008720.1.1	Tomato	nucleus	74.34	94.17
PGSC0003DMT400000921	Potato	cytosol	74.34	94.17
PGSC0003DMT400078454	Potato	cytosol	72.37	91.67
Solyc05g008010.2.1	Tomato	cytosol, nucleus, unclear	71.71	90.83
VIT_13s0064g01240.t01	Wine grape	cytosol	71.05	89.26
KRH60160	Soybean	cytosol	70.39	89.17
GSMUA_Achr6P03460_001	Banana	cytosol	70.39	88.43
GSMUA_Achr3P03830_001	Banana	cytosol	69.74	87.6
KRH74177	Soybean	cytosol	69.08	87.5
KRH49031	Soybean	endoplasmic reticulum	69.08	87.5
KRH41451	Soybean	cytosol, endoplasmic reticulum	68.42	86.67
CDY32765	Canola	cytosol	67.76	86.55
CDY20712	Canola	cytosol	67.76	86.55
CDY32877	Canola	cytosol	67.76	86.55
CDY11907	Canola	cytosol	67.76	86.55
CDY41796	Canola	cytosol	67.76	86.55
CDX88585	Canola	cytosol	67.76	86.55
Bra035629.1-P	Field mustard	cytosol	67.76	86.55
Bra026455.1-P	Field mustard	cytosol	67.76	86.55
Bra002798.1-P	Field mustard	cytosol	67.76	86.55
AT4G26230.1	Thale cress	cytosol	67.76	86.55
CDY50008	Canola	cytosol	67.76	85.83
AT5G56710.1	Thale cress	cytosol	67.11	85.71
CDX94356	Canola	cytosol	67.11	85.71
CDX89354	Canola	cytosol	67.11	85.71
GSMUA_Achr9P12560_001	Banana	cytosol	67.11	85.0
Bra031094.1-P	Field mustard	cytosol	66.45	84.87
CDX81941	Canola	cytosol	66.45	84.87
Bra010436.1-P	Field mustard	cytosol	65.13	84.62
CDY14309	Canola	cytosol	61.18	84.55
CDY21651	Canola	cytosol	65.79	84.03
Bra036709.1-P	Field mustard	cytosol	65.79	84.03
CDX82718	Canola	cytosol	65.79	84.03
CDY48721	Canola	cytosol	65.79	84.03
CDY03347	Canola	cytosol	65.79	84.03
EES15405	Sorghum	cytosol	67.11	83.61
Os08t0505300-00	Rice	plasma membrane	36.18	83.33
AT2G19740.1	Thale cress	cytosol	65.13	83.19
EES05621	Sorghum	cytosol	67.11	82.93
CDY26343	Canola	cytosol	64.47	82.35
Bra006860.1-P	Field mustard	cytosol	64.47	82.35
Zm00001d045889_P002	Maize	cytosol, extracellular	66.45	81.45
Os06t0319700-01	Rice	cytosol, nucleus, plasma membrane, plastid	66.45	81.45
TraesCS7D01G243500.1	Wheat	cytosol	62.5	77.87
TraesCS7B01G146600.1	Wheat	cytosol, unclear	62.5	77.87
TraesCS7A01G244800.1	Wheat	cytosol	62.5	77.87
Bra038580.1-P	Field mustard	cytosol	36.84	77.78
Zm00001d051662_P001	Maize	cytosol	64.47	77.17
KRH66370	Soybean	cytosol	32.24	68.06
TraesCS6D01G262100.1	Wheat	cytosol	51.97	64.23
TraesCS6B01G310100.1	Wheat	cytosol, unclear	51.97	64.23
Zm00001d017850_P001	Maize	cytosol, extracellular, mitochondrion	51.97	64.23
Bra039016.1-P	Field mustard	nucleus	39.47	51.28
KRH63209	Soybean	cytosol	30.26	40.35

Protein Annotations

EntrezGene:100267870	wikigene:100267870	MapMan:17.1.2.1.32	Gene3D:3.10.440.10	EMBL:AM478905	ProteinID:CAN62000
ProteinID:CAN62000.1	ProteinID:CCB51466	ProteinID:CCB51466.1	UniProt:F6HGW8	EMBL:FN595756	GO:GO:0002181
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023621	EntrezGene:LOC100267870
wikigene:LOC100267870	PFAM:PD006030	PFAM:PF01198	ScanProsite:PS01144	PANTHER:PTHR10956	PANTHER:PTHR10956:SF22
InterPro:Ribosomal_L31e	InterPro:Ribosomal_L31e_CS	InterPro:Ribosomal_L31e_dom_sf	SMART:SM01380	SUPFAM:SSF54575	TIGR:TC62505
TIGR:TC63245	UniParc:UPI000210879D	ArrayExpress:VIT_11s0016g02650	EnsemblPlantsGene:VIT_11s0016g02650	EnsemblPlants:VIT_11s0016g02650.t01	unigene:Vvi.3166
RefSeq:XP_002282984	RefSeq:XP_002282984.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:2118789..2123137

Molecular Weight (calculated)

17788.8 Da

IEP (calculated)

10.662

GRAVY (calculated)

-0.782

Length

152 amino acids

Sequence
(BLAST)

001: MRDLKSTCHH TRRFSFYHLS ILRCCRGEGS VKMVEKTKGR KEEVVTREYT INLHKRLHGC TFKKKAPKAI KEIRKFAQKA MGTKDVRVDV KLNKHIWSRG
101: IRSVPRRIRV RIARKRNDDE DAKEELYSLV TVAEIPAEGL KGLETKIIEE DD

Best Arabidopsis Sequence Match ( AT4G26230.1 )
(BLAST)

001: MSEKKGRKEE VVTREYTINL HRRLHSCTFK KKAPKAIKEI RKFAEKEMGT KDVRVDVKLN KQIWSKGIRG PPRRIRVRVA RKRNDDEDAK EEFFSLVTVA
101: EIPAEGLSGL GTKIIEEED

Arabidopsis Description

RPL31BPutative ribosomal protein [Source:UniProtKB/TrEMBL;Acc:Q0WRN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.