Factsheet for Solyc05g008010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078454	Potato	cytosol	99.17	99.17
Solyc12g008720.1.1	Tomato	nucleus	93.33	93.33
HORVU5Hr1G052980.2	Barley	cytosol	86.67	85.95
GSMUA_Achr6P03460_001	Banana	cytosol	85.83	85.12
KRH49031	Soybean	endoplasmic reticulum	85.0	85.0
KRH60160	Soybean	cytosol	85.0	85.0
KRH74177	Soybean	cytosol	85.0	85.0
GSMUA_Achr3P03830_001	Banana	cytosol	85.0	84.3
CDY50008	Canola	cytosol	84.17	84.17
KRH41451	Soybean	cytosol, endoplasmic reticulum	84.17	84.17
EES05621	Sorghum	cytosol	85.83	83.74
Os08t0505300-00	Rice	plasma membrane	45.83	83.33
Bra035629.1-P	Field mustard	cytosol	82.5	83.19
CDY41796	Canola	cytosol	82.5	83.19
CDY32877	Canola	cytosol	82.5	83.19
CDY32765	Canola	cytosol	82.5	83.19
AT4G26230.1	Thale cress	cytosol	82.5	83.19
CDY20712	Canola	cytosol	82.5	83.19
CDY11907	Canola	cytosol	82.5	83.19
Bra002798.1-P	Field mustard	cytosol	82.5	83.19
Bra026455.1-P	Field mustard	cytosol	82.5	83.19
CDX88585	Canola	cytosol	82.5	83.19
Bra031094.1-P	Field mustard	cytosol	82.5	83.19
CDX81941	Canola	cytosol	82.5	83.19
Bra010436.1-P	Field mustard	cytosol	80.83	82.91
CDY14309	Canola	cytosol	75.83	82.73
CDY48721	Canola	cytosol	81.67	82.35
AT2G19740.1	Thale cress	cytosol	81.67	82.35
CDY21651	Canola	cytosol	81.67	82.35
CDY03347	Canola	cytosol	81.67	82.35
CDX94356	Canola	cytosol	81.67	82.35
CDX89354	Canola	cytosol	81.67	82.35
CDX82718	Canola	cytosol	81.67	82.35
AT5G56710.1	Thale cress	cytosol	81.67	82.35
Bra036709.1-P	Field mustard	cytosol	81.67	82.35
Zm00001d045889_P002	Maize	cytosol, extracellular	85.0	82.26
EES15405	Sorghum	cytosol	83.33	81.97
Os06t0319700-01	Rice	cytosol, nucleus, plasma membrane, plastid	84.17	81.45
GSMUA_Achr9P12560_001	Banana	cytosol	80.83	80.83
CDY26343	Canola	cytosol	80.0	80.67
TraesCS7A01G244800.1	Wheat	cytosol	80.83	79.51
TraesCS7B01G146600.1	Wheat	cytosol, unclear	80.83	79.51
TraesCS7D01G243500.1	Wheat	cytosol	80.83	79.51
Bra006860.1-P	Field mustard	cytosol	78.33	78.99
Zm00001d051662_P001	Maize	cytosol	83.33	78.74
Bra038580.1-P	Field mustard	cytosol	45.83	76.39
VIT_11s0016g02650.t01	Wine grape	cytosol	90.83	71.71
KRH66370	Soybean	cytosol	41.67	69.44
Zm00001d017850_P001	Maize	cytosol, extracellular, mitochondrion	67.5	65.85
TraesCS6B01G310100.1	Wheat	cytosol, unclear	66.67	65.04
TraesCS6D01G262100.1	Wheat	cytosol	66.67	65.04
Bra039016.1-P	Field mustard	nucleus	49.17	50.43
KRH63209	Soybean	cytosol	35.83	37.72

Protein Annotations

MapMan:17.1.2.1.32	Gene3D:3.10.440.10	GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	InterPro:IPR023621	UniProt:K4BWX5	PFAM:PD006030	PFAM:PF01198	ScanProsite:PS01144
PANTHER:PTHR10956	PANTHER:PTHR10956:SF22	InterPro:Ribosomal_L31e	InterPro:Ribosomal_L31e_CS	InterPro:Ribosomal_L31e_dom_sf	SMART:SM01380
SUPFAM:SSF54575	EnsemblPlantsGene:Solyc05g008010.2	EnsemblPlants:Solyc05g008010.2.1	UniParc:UPI0002766089	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:2433806..2436121

Molecular Weight (calculated)

13883.0 Da

IEP (calculated)

10.671

GRAVY (calculated)

-0.813

Length

120 amino acids

Sequence
(BLAST)

001: MSDKTKGRKE EVVTREYTIN LHKRLHGCTF KKKAPTAIKE IRKFAVKAMG TKDVRVDVKL NKHIWSRGIR SVPRRVRVRI ARKRNDDEDA KEELYSLVTV
101: TEIPPEGLKG LGTKIIEDEE

Best Arabidopsis Sequence Match ( AT2G19740.1 )
(BLAST)

001: MEKGKGRKEE VVTREYTINL HRRLHSCTFK KKAPNAIKEI RKFALKAMGT KDVRVDVKLN KQIWSKGIRG PPRRIRVRVA RKRNDDEDAK EEFFSLVTVA
101: EIPAEGLSGL GTKVIEEEE

Arabidopsis Description

RPL31A60S ribosomal protein L31-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.