Factsheet for Bra006860.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002798.1-P	Field mustard	cytosol	94.96	94.96
Bra026455.1-P	Field mustard	cytosol	94.96	94.96
Bra035629.1-P	Field mustard	cytosol	94.96	94.96
CDY11907	Canola	cytosol	94.96	94.96
AT5G56710.1	Thale cress	cytosol	91.6	91.6
Bra010436.1-P	Field mustard	cytosol	89.92	91.45
Bra036709.1-P	Field mustard	cytosol	87.39	87.39
Bra031094.1-P	Field mustard	cytosol	86.55	86.55
Bra038580.1-P	Field mustard	cytosol	49.58	81.94
Solyc12g008720.1.1	Tomato	nucleus	80.67	80.0
PGSC0003DMT400000921	Potato	cytosol	80.67	80.0
KRH60160	Soybean	cytosol	79.83	79.17
PGSC0003DMT400078454	Potato	cytosol	79.83	79.17
KRH74177	Soybean	cytosol	79.83	79.17
KRH49031	Soybean	endoplasmic reticulum	79.83	79.17
KRH41451	Soybean	cytosol, endoplasmic reticulum	78.99	78.33
Solyc05g008010.2.1	Tomato	cytosol, nucleus, unclear	78.99	78.33
GSMUA_Achr6P03460_001	Banana	cytosol	78.99	77.69
HORVU5Hr1G052980.2	Barley	cytosol	78.99	77.69
GSMUA_Achr3P03830_001	Banana	cytosol	78.15	76.86
GSMUA_Achr9P12560_001	Banana	cytosol	76.47	75.83
EES15405	Sorghum	cytosol	75.63	73.77
EES05621	Sorghum	cytosol	75.63	73.17
Os08t0505300-00	Rice	plasma membrane	40.34	72.73
Zm00001d045889_P002	Maize	cytosol, extracellular	73.11	70.16
TraesCS7D01G243500.1	Wheat	cytosol	71.43	69.67
TraesCS7B01G146600.1	Wheat	cytosol, unclear	71.43	69.67
TraesCS7A01G244800.1	Wheat	cytosol	71.43	69.67
Zm00001d051662_P001	Maize	cytosol	73.95	69.29
Os06t0319700-01	Rice	cytosol, nucleus, plasma membrane, plastid	71.43	68.55
VIT_11s0016g02650.t01	Wine grape	cytosol	82.35	64.47
KRH66370	Soybean	cytosol	36.97	61.11
TraesCS6D01G262100.1	Wheat	cytosol	57.98	56.1
TraesCS6B01G310100.1	Wheat	cytosol, unclear	57.98	56.1
Zm00001d017850_P001	Maize	cytosol, extracellular, mitochondrion	57.98	56.1
Bra039016.1-P	Field mustard	nucleus	52.1	52.99
KRH63209	Soybean	cytosol	31.93	33.33

Protein Annotations

MapMan:17.1.2.1.32	Gene3D:3.10.440.10	EnsemblPlantsGene:Bra006860	EnsemblPlants:Bra006860.1	EnsemblPlants:Bra006860.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR023621	UniProt:M4CRL9	PFAM:PD006030	PFAM:PF01198	PANTHER:PTHR10956
PANTHER:PTHR10956:SF22	InterPro:Ribosomal_L31e	InterPro:Ribosomal_L31e_dom_sf	SMART:SM01380	SUPFAM:SSF54575	UniParc:UPI000253FD23
SEG:seg	:	:	:	:	:

Description

AT5G56710 (E=3e-046) | 60S ribosomal protein L31 (RPL31C)

Coordinates

chrA03:+:5385863..5386780

Molecular Weight (calculated)

13794.7 Da

IEP (calculated)

10.744

GRAVY (calculated)

-0.903

Length

119 amino acids

Sequence
(BLAST)

001: MSEKKGRKEE VVTREYTINL HRRLHSCTFK KKAPKAIKDI RKFAEKAMGT KAVREDVKWT KKIWSRGIRG PPRRIRVRVA RKRNDDEDAK EEFFSLVTVA
101: EIPAEGLSGL GTKVIDEED

Best Arabidopsis Sequence Match ( AT5G56710.1 )
(BLAST)

001: MSEKKGRKEE VITREYTINL HRRLHKCTFK KKAPKAIKEI RKFAEKAMGT KDVRVDVKLN KQIWSKGIRG PPRRIRVRVA RKRNDDEDAK EEFFSLVTVA
101: EIPAEGLSGL GTKVIEEED

Arabidopsis Description

RPL31C60S ribosomal protein L31-3 [Source:UniProtKB/Swiss-Prot;Acc:P51420]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.