Factsheet for TraesCS6B01G310100.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G262100.1	Wheat	cytosol	100.0	100.0
Zm00001d017850_P001	Maize	cytosol, extracellular, mitochondrion	92.68	92.68
HORVU6Hr1G070670.1	Barley	cytosol	100.0	84.25
EES05621	Sorghum	cytosol	72.36	72.36
Bra038580.1-P	Field mustard	cytosol	41.46	70.83
KRH66370	Soybean	cytosol	40.65	69.44
GSMUA_Achr6P03460_001	Banana	cytosol	66.67	67.77
PGSC0003DMT400078454	Potato	cytosol	65.85	67.5
GSMUA_Achr9P12560_001	Banana	cytosol	65.85	67.5
TraesCS7B01G146600.1	Wheat	cytosol, unclear	66.67	67.21
VIT_13s0064g01240.t01	Wine grape	cytosol	65.85	66.94
Zm00001d051662_P001	Maize	cytosol	69.11	66.93
Solyc12g008720.1.1	Tomato	nucleus	65.04	66.67
Solyc05g008010.2.1	Tomato	cytosol, nucleus, unclear	65.04	66.67
PGSC0003DMT400000921	Potato	cytosol	65.04	66.67
GSMUA_Achr3P03830_001	Banana	cytosol	65.04	66.12
KRH74177	Soybean	cytosol	63.41	65.0
KRH60160	Soybean	cytosol	63.41	65.0
KRH49031	Soybean	endoplasmic reticulum	63.41	65.0
KRH41451	Soybean	cytosol, endoplasmic reticulum	63.41	65.0
CDX81941	Canola	cytosol	60.98	63.03
Bra031094.1-P	Field mustard	cytosol	60.98	63.03
CDY14309	Canola	cytosol	56.1	62.73
CDY03347	Canola	cytosol	60.16	62.18
CDY21651	Canola	cytosol	60.16	62.18
CDX82718	Canola	cytosol	60.16	62.18
AT2G19740.1	Thale cress	cytosol	60.16	62.18
CDY48721	Canola	cytosol	60.16	62.18
AT5G56710.1	Thale cress	cytosol	60.16	62.18
CDY32877	Canola	cytosol	59.35	61.34
CDY41796	Canola	cytosol	59.35	61.34
Bra002798.1-P	Field mustard	cytosol	59.35	61.34
Bra026455.1-P	Field mustard	cytosol	59.35	61.34
Bra035629.1-P	Field mustard	cytosol	59.35	61.34
Bra036709.1-P	Field mustard	cytosol	59.35	61.34
CDX88585	Canola	cytosol	59.35	61.34
CDY11907	Canola	cytosol	59.35	61.34
CDY20712	Canola	cytosol	59.35	61.34
CDY26343	Canola	cytosol	59.35	61.34
CDY32765	Canola	cytosol	59.35	61.34
CDY50008	Canola	cytosol	59.35	60.83
CDX94356	Canola	cytosol	58.54	60.5
CDX89354	Canola	cytosol	58.54	60.5
AT4G26230.1	Thale cress	cytosol	58.54	60.5
Bra010436.1-P	Field mustard	cytosol	56.1	58.97
Bra006860.1-P	Field mustard	cytosol	56.1	57.98
VIT_11s0016g02650.t01	Wine grape	cytosol	64.23	51.97
Bra039016.1-P	Field mustard	nucleus	39.84	41.88
KRH63209	Soybean	cytosol	21.95	23.68

Protein Annotations

MapMan:17.1.2.1.32	Gene3D:3.10.440.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023621	PFAM:PD006030
PFAM:PF01198	PANTHER:PTHR10956	PANTHER:PTHR10956:SF22	InterPro:Ribosomal_L31e	InterPro:Ribosomal_L31e_dom_sf	SMART:SM01380
SUPFAM:SSF54575	EnsemblPlantsGene:TraesCS6B01G310100	EnsemblPlants:TraesCS6B01G310100.1	TIGR:cd00463	SEG:seg	:

Description

No Description!

Coordinates

chr6B:-:555344513..555346419

Molecular Weight (calculated)

14121.1 Da

IEP (calculated)

10.615

GRAVY (calculated)

-0.890

Length

123 amino acids

Sequence
(BLAST)

001: MSEKKRAPGP RKDEVVTREY TVNLHKRLHG CTFKKKAPNA IKEIRKFAQK AMGTNDVRID VKLNKHIWSS GIRSVPRRVR VRIARKRNDE EDAKEELYSL
101: VTVAEVPQEG LKGLGTKVVE DED

Best Arabidopsis Sequence Match ( AT5G56710.1 )
(BLAST)

001: MSEKKGRKEE VITREYTINL HRRLHKCTFK KKAPKAIKEI RKFAEKAMGT KDVRVDVKLN KQIWSKGIRG PPRRIRVRVA RKRNDDEDAK EEFFSLVTVA
101: EIPAEGLSGL GTKVIEEED

Arabidopsis Description

RPL31C60S ribosomal protein L31-3 [Source:UniProtKB/Swiss-Prot;Acc:P51420]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.