CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49031	Soybean	endoplasmic reticulum	98.33	98.33
KRH74177	Soybean	cytosol	98.33	98.33
KRH60160	Soybean	cytosol	97.5	97.5
Solyc12g008720.1.1	Tomato	nucleus	86.67	86.67
PGSC0003DMT400000921	Potato	cytosol	86.67	86.67
HORVU5Hr1G052980.2	Barley	cytosol	85.83	85.12
GSMUA_Achr6P03460_001	Banana	cytosol	85.83	85.12
PGSC0003DMT400078454	Potato	cytosol	85.0	85.0
Solyc05g008010.2.1	Tomato	cytosol, nucleus, unclear	84.17	84.17
GSMUA_Achr3P03830_001	Banana	cytosol	84.17	83.47
KRH66370	Soybean	cytosol	50.0	83.33
Bra035629.1-P	Field mustard	cytosol	82.5	83.19
Bra002798.1-P	Field mustard	cytosol	82.5	83.19
Bra026455.1-P	Field mustard	cytosol	82.5	83.19
CDX88585	Canola	cytosol	82.5	83.19
CDY41796	Canola	cytosol	82.5	83.19
CDY11907	Canola	cytosol	82.5	83.19
CDY32877	Canola	cytosol	82.5	83.19
CDY20712	Canola	cytosol	82.5	83.19
CDY32765	Canola	cytosol	82.5	83.19
CDX89354	Canola	cytosol	81.67	82.35
CDX94356	Canola	cytosol	81.67	82.35
CDY50008	Canola	cytosol	81.67	81.67
AT5G56710.1	Thale cress	cytosol	80.83	81.51
CDY14309	Canola	cytosol	74.17	80.91
GSMUA_Achr9P12560_001	Banana	cytosol	80.83	80.83
AT4G26230.1	Thale cress	cytosol	80.0	80.67
EES05621	Sorghum	cytosol	82.5	80.49
Bra010436.1-P	Field mustard	cytosol	78.33	80.34
AT2G19740.1	Thale cress	cytosol	78.33	78.99
Bra006860.1-P	Field mustard	cytosol	78.33	78.99
CDY21651	Canola	cytosol	78.33	78.99
CDY03347	Canola	cytosol	78.33	78.99
CDX82718	Canola	cytosol	78.33	78.99
CDY48721	Canola	cytosol	78.33	78.99
Bra036709.1-P	Field mustard	cytosol	78.33	78.99
Os08t0505300-00	Rice	plasma membrane	43.33	78.79
EES15405	Sorghum	cytosol	80.0	78.69
Bra031094.1-P	Field mustard	cytosol	77.5	78.15
Zm00001d045889_P002	Maize	cytosol, extracellular	80.0	77.42
CDX81941	Canola	cytosol	76.67	77.31
CDY26343	Canola	cytosol	76.67	77.31
Os06t0319700-01	Rice	cytosol, nucleus, plasma membrane, plastid	79.17	76.61
Zm00001d051662_P001	Maize	cytosol	80.83	76.38
TraesCS7A01G244800.1	Wheat	cytosol	77.5	76.23
TraesCS7B01G146600.1	Wheat	cytosol, unclear	77.5	76.23
TraesCS7D01G243500.1	Wheat	cytosol	77.5	76.23
Bra038580.1-P	Field mustard	cytosol	42.5	70.83
VIT_11s0016g02650.t01	Wine grape	cytosol	86.67	68.42
TraesCS6B01G310100.1	Wheat	cytosol, unclear	65.0	63.41
TraesCS6D01G262100.1	Wheat	cytosol	65.0	63.41
Zm00001d017850_P001	Maize	cytosol, extracellular, mitochondrion	64.17	62.6
Bra039016.1-P	Field mustard	nucleus	46.67	47.86
KRH63209	Soybean	cytosol	39.17	41.23

Protein Annotations

EntrezGene:100499742	MapMan:17.1.2.1.32	Gene3D:3.10.440.10	EMBL:ACUP02004766	EMBL:BT089378	UniProt:C6SW35
EnsemblPlantsGene:GLYMA_08G030900	GO:GO:0002181	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
InterPro:IPR023621	EnsemblPlants:KRH41451	ProteinID:KRH41451	ProteinID:KRH41451.1	PFAM:PD006030	PFAM:PF01198
ScanProsite:PS01144	PANTHER:PTHR10956	InterPro:Ribosomal_L31e	InterPro:Ribosomal_L31e_CS	InterPro:Ribosomal_L31e_dom_sf	SMART:SM01380
SUPFAM:SSF54575	UniParc:UPI0001B15A04	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:2452450..2453369

Molecular Weight (calculated)

13855.9 Da

IEP (calculated)

10.614

GRAVY (calculated)

-0.761

Length

120 amino acids

Sequence
(BLAST)

001: MVEKAKGRKE EVVTREFTIN LHKRLHGCTF KKKAPKAIKE IRKFAQKAMG TNDVRVDVKL NKAVWSQGIR SVPRRIRVRI ARKRNDDEDA KEELYSLVTV
101: VEIPKDELKG LGTKVIDDED

Best Arabidopsis Sequence Match ( AT5G56710.1 )
(BLAST)

001: MSEKKGRKEE VITREYTINL HRRLHKCTFK KKAPKAIKEI RKFAEKAMGT KDVRVDVKLN KQIWSKGIRG PPRRIRVRVA RKRNDDEDAK EEFFSLVTVA
101: EIPAEGLSGL GTKVIEEED

Arabidopsis Description

RPL31C60S ribosomal protein L31-3 [Source:UniProtKB/Swiss-Prot;Acc:P51420]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.