Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g014770.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G38750.1 | Solyc02g014770.2.1 | AT2G02090.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400050067 | Potato | cytosol | 96.2 | 96.2 |
| Solyc01g097550.2.1 | Tomato | cytosol | 82.28 | 83.07 |
| VIT_13s0019g00750.t01 | Wine grape | cytosol | 62.66 | 63.06 |
| KRH13431 | Soybean | cytosol, nucleus | 61.39 | 61.78 |
| KRH20781 | Soybean | cytosol | 61.08 | 61.47 |
| AT2G38750.1 | Thale cress | cytosol | 50.95 | 50.47 |
| CDX93305 | Canola | cytosol | 50.63 | 50.0 |
| CDY18369 | Canola | cytosol | 50.63 | 50.0 |
| Bra017103.1-P | Field mustard | cytosol | 50.63 | 50.0 |
| CDY07704 | Canola | cytosol | 49.37 | 49.52 |
| CDY14436 | Canola | cytosol | 49.37 | 49.52 |
| Bra000090.1-P | Field mustard | cytosol | 49.05 | 49.21 |
| GSMUA_Achr3P17520_001 | Banana | cytosol | 45.25 | 46.28 |
| TraesCS1B01G251800.1 | Wheat | cytosol | 45.25 | 45.4 |
| TraesCS1D01G239800.2 | Wheat | cytosol | 44.62 | 44.76 |
| TraesCS1A01G239600.1 | Wheat | cytosol | 44.62 | 44.76 |
| Os05t0382600-02 | Rice | nucleus | 43.67 | 43.26 |
| KXG21898 | Sorghum | cytosol | 44.62 | 43.12 |
| Zm00001d038065_P001 | Maize | cytosol | 42.72 | 41.67 |
| EER92254 | Sorghum | plastid | 45.89 | 39.19 |
| Zm00001d029207_P001 | Maize | plastid | 45.25 | 39.18 |
| HORVU1Hr1G057170.11 | Barley | cytosol | 45.25 | 38.75 |
| Solyc04g055170.2.1 | Tomato | plastid | 37.34 | 37.34 |
| Solyc04g073990.2.1 | Tomato | plastid | 36.39 | 36.62 |
| TraesCS4D01G278600.1 | Wheat | plastid | 41.14 | 35.81 |
| TraesCS4A01G023400.1 | Wheat | plastid | 41.14 | 35.42 |
| TraesCS4B01G280100.1 | Wheat | plastid | 40.82 | 35.34 |
| HORVU4Hr1G074130.2 | Barley | plastid | 40.82 | 34.13 |
| Solyc10g047240.1.1 | Tomato | cytosol | 34.18 | 33.86 |
| Solyc01g097510.2.1 | Tomato | cytosol, nucleus, peroxisome | 33.54 | 33.33 |
| Solyc01g097540.2.1 | Tomato | cytosol, nucleus, peroxisome | 33.54 | 33.33 |
| Solyc05g051980.2.1 | Tomato | cytosol | 36.39 | 33.14 |
| Solyc10g044690.1.1 | Tomato | cytosol | 33.23 | 33.12 |
| Solyc04g078820.2.1 | Tomato | nucleus | 30.38 | 30.38 |
| Solyc01g081530.1.1 | Tomato | cytosol | 24.05 | 29.92 |
| Solyc04g008270.2.1 | Tomato | cytosol | 28.16 | 28.16 |
Protein Annotations
| Gene3D:1.10.220.10 | MapMan:35.1 | InterPro:Annexin | InterPro:AnnexinD_plant | InterPro:Annexin_repeat | InterPro:Annexin_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005544 | GO:GO:0008289 | InterPro:IPR037104 |
| UniProt:K4B0D9 | PFAM:PF00191 | PRINTS:PR00196 | PRINTS:PR01814 | PANTHER:PTHR10502 | PANTHER:PTHR10502:SF104 |
| SMART:SM00335 | SUPFAM:SSF47874 | EnsemblPlantsGene:Solyc01g097520.2 | EnsemblPlants:Solyc01g097520.2.1 | UniParc:UPI000276802C | SEG:seg |
Description
No Description!
Coordinates
chr1:+:88344771..88347023
Molecular Weight (calculated)
36470.5 Da
IEP (calculated)
6.610
GRAVY (calculated)
-0.383
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEANSYAAL TKAFSGLGVD ENLFISTLGK WNRHQRESYR VSTPGFFRED KRQFQRWDDQ HILQLRQEFL RLKDAVVLYT MHPWERDARL FKEALLLQVP
101: KHDVLIEIAC TRSSEDLLGA RKAYHSLFEH SIEEDIAFHV RSSERKLLVA LVSSYRYEGP RVNDDLAKSE AKIFVNAIKN ANKKKLIDED EEIVRILSTR
201: SKLHLKAIYS HYKEITGNFL DEDLECDLTL KQVVQCLCIP KAYFSKILIA SLRLDVDESA KDSVTRVIVS RADDDDMQQI KEEFQSKYGT TLAEKIAEVA
301: NGSYKDFLLT IIAKSE
101: KHDVLIEIAC TRSSEDLLGA RKAYHSLFEH SIEEDIAFHV RSSERKLLVA LVSSYRYEGP RVNDDLAKSE AKIFVNAIKN ANKKKLIDED EEIVRILSTR
201: SKLHLKAIYS HYKEITGNFL DEDLECDLTL KQVVQCLCIP KAYFSKILIA SLRLDVDESA KDSVTRVIVS RADDDDMQQI KEEFQSKYGT TLAEKIAEVA
301: NGSYKDFLLT IIAKSE
001: MALPLELESL TEAISAGMGM GVDENALIST LGKSQKEHRK LFRKASKSFF VEDEERAFEK CHDHFVRHLK LEFSRFNTAV VMWAMHPWER DARLVKKALK
101: KGEEAYNLIV EVSCTRSAED LLGARKAYHS LFDQSMEEDI ASHVHGPQRK LLVGLVSAYR YEGNKVKDDS AKSDAKILAE AVASSGEEAV EKDEVVRILT
201: TRSKLHLQHL YKHFNEIKGS DLLGGVSKSS LLNEALICLL KPALYFSKIL DASLNKDADK TTKKWLTRVF VTRADHSDEM NEIKEEYNNL YGETLAQRIQ
301: EKIKGNYRDF LLTLLSKSD
101: KGEEAYNLIV EVSCTRSAED LLGARKAYHS LFDQSMEEDI ASHVHGPQRK LLVGLVSAYR YEGNKVKDDS AKSDAKILAE AVASSGEEAV EKDEVVRILT
201: TRSKLHLQHL YKHFNEIKGS DLLGGVSKSS LLNEALICLL KPALYFSKIL DASLNKDADK TTKKWLTRVF VTRADHSDEM NEIKEEYNNL YGETLAQRIQ
301: EKIKGNYRDF LLTLLSKSD
Arabidopsis Description
ANN4Annexin D4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVJ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.