CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89166
KRH49484

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38750.1	KRG89166	AT2G02090.1	21798944
AT2G38750.1	KRH49484	AT2G02090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20781	Soybean	cytosol	96.5	96.5
VIT_13s0139g00480.t01	Wine grape	cytosol	39.81	65.79
PGSC0003DMT400050067	Potato	cytosol	62.74	62.34
Solyc01g097520.2.1	Tomato	nucleus	61.78	61.39
Solyc01g097550.2.1	Tomato	cytosol	58.6	58.79
AT2G38750.1	Thale cress	cytosol	58.28	57.37
CDX93305	Canola	cytosol	57.32	56.25
CDY07704	Canola	cytosol	56.37	56.19
CDY14436	Canola	cytosol	56.05	55.87
Bra000090.1-P	Field mustard	cytosol	55.73	55.56
CDY18369	Canola	cytosol	56.37	55.31
Bra017103.1-P	Field mustard	cytosol	56.37	55.31
VIT_13s0139g00420.t01	Wine grape	cytosol	42.68	54.47
GSMUA_Achr3P17520_001	Banana	cytosol	50.64	51.46
TraesCS1D01G239800.2	Wheat	cytosol	51.59	51.43
TraesCS1B01G251800.1	Wheat	cytosol	51.27	51.11
VIT_00s0131g00310.t01	Wine grape	cytosol	52.23	50.93
TraesCS1A01G239600.1	Wheat	cytosol	50.64	50.48
VIT_00s0131g00350.t01	Wine grape	cytosol	50.32	49.07
Os05t0382600-02	Rice	nucleus	47.45	46.71
VIT_00s0201g00090.t01	Wine grape	cytosol	24.84	45.88
KXG21898	Sorghum	cytosol	47.77	45.87
VIT_00s0631g00010.t01	Wine grape	cytosol	15.92	45.45
Zm00001d038065_P001	Maize	cytosol	46.5	45.06
HORVU1Hr1G057170.11	Barley	cytosol	51.59	43.9
EER92254	Sorghum	plastid	47.13	40.0
Zm00001d029207_P001	Maize	plastid	45.22	38.9
TraesCS4D01G278600.1	Wheat	plastid	44.27	38.29
KRH18900	Soybean	endoplasmic reticulum	38.53	38.29
TraesCS4A01G023400.1	Wheat	plastid	44.59	38.15
TraesCS4B01G280100.1	Wheat	plastid	44.27	38.08
KRH59342	Soybean	endoplasmic reticulum	36.94	36.83
KRH13419	Soybean	nucleus	36.62	36.62
HORVU4Hr1G074130.2	Barley	plastid	43.95	36.51
KRH20773	Soybean	nucleus	36.31	36.31
KRH43188	Soybean	endoplasmic reticulum	36.31	36.19
KRH11860	Soybean	cytosol	35.99	36.1
KRH30022	Soybean	endoplasmic reticulum, nucleus	35.67	35.9
KRH13429	Soybean	cytosol	33.44	35.47
KRH62894	Soybean	cytosol	35.03	35.03
KRH36874	Soybean	cytosol	35.03	35.03
KRH20782	Soybean	cytosol	35.67	35.0
KRH20777	Soybean	nucleus	34.71	34.82
KRH20779	Soybean	cytosol, endoplasmic reticulum	32.48	34.69
KRH13434	Soybean	cytosol	34.71	34.06
KRH30018	Soybean	cytosol	25.16	32.51
KRH13430	Soybean	mitochondrion	14.01	31.21
KRH54748	Soybean	endoplasmic reticulum	17.2	30.68
KRG89259	Soybean	cytosol	27.71	30.0
KRH60582	Soybean	cytosol	19.11	29.7
KRH39009	Soybean	cytosol, endoplasmic reticulum, nucleus	29.62	29.34
KRH48709	Soybean	endoplasmic reticulum, nucleus	29.3	29.02
KRH41882	Soybean	cytosol	28.66	28.57
KRH49730	Soybean	cytosol	21.97	28.4
KRH20641	Soybean	cytosol	23.57	20.44

Protein Annotations

Gene3D:1.10.220.10	EntrezGene:100796623	MapMan:35.1	EMBL:ACUP02009721	InterPro:Annexin	InterPro:Annexin_repeat
InterPro:Annexin_sf	UniProt:D6QX28	EnsemblPlantsGene:GLYMA_15G238400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005544	GO:GO:0008289	EMBL:HM012592	InterPro:IPR037104	EnsemblPlants:KRH13431	ProteinID:KRH13431
ProteinID:KRH13431.1	PFAM:PF00191	PRINTS:PR00196	PANTHER:PTHR10502	PANTHER:PTHR10502:SF104	SMART:SM00335
SUPFAM:SSF47874	UniParc:UPI000189D87C	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:44915236..44918836

Molecular Weight (calculated)

36173.3 Da

IEP (calculated)

8.706

GRAVY (calculated)

-0.512

Length

314 amino acids

Sequence
(BLAST)

001: MAFNQELEAV TQAFSGHGVD EKSLVTLLGK WDPLERESFR KKTPHLFSED HERHFQRWDD QYVRLLKHEF VRFKNAVVLW SMHPWERDAR LVKEALKKGP
101: NAYGVLIEVS CTRSSEELLG ARKAYHSLFD HSIEEDVASH IHGIERKLLV ALLSAYRYEG TKVKDDTAKS EAKILSNAIK NAHKKPINED DEVIRILATR
201: SKLHLQAVYK HYKEISGKNL DEDLDDLRFK EAVQCLCTPQ TYFSKVLNAA LRIDVDKNTK KSLTRVVVTR ADIDMKDIKA EYHNLYGVSL PQKVEEVARG
301: SYKDFLLNLI VRGG

Best Arabidopsis Sequence Match ( AT2G38750.1 )
(BLAST)

001: MALPLELESL TEAISAGMGM GVDENALIST LGKSQKEHRK LFRKASKSFF VEDEERAFEK CHDHFVRHLK LEFSRFNTAV VMWAMHPWER DARLVKKALK
101: KGEEAYNLIV EVSCTRSAED LLGARKAYHS LFDQSMEEDI ASHVHGPQRK LLVGLVSAYR YEGNKVKDDS AKSDAKILAE AVASSGEEAV EKDEVVRILT
201: TRSKLHLQHL YKHFNEIKGS DLLGGVSKSS LLNEALICLL KPALYFSKIL DASLNKDADK TTKKWLTRVF VTRADHSDEM NEIKEEYNNL YGETLAQRIQ
301: EKIKGNYRDF LLTLLSKSD

Arabidopsis Description

ANN4Annexin D4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVJ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.