CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59342	Soybean	endoplasmic reticulum	96.83	96.83
CDY71429	Canola	cytosol	55.24	75.98
CDY33992	Canola	cytosol	75.56	75.32
Bra031890.1-P	Field mustard	cytosol	75.24	75.0
Bra024346.1-P	Field mustard	cytosol	74.29	74.05
CDY14530	Canola	cytosol	74.29	74.05
AT5G65020.1	Thale cress	cytosol	73.65	73.19
CDX96984	Canola	cytosol	73.65	72.96
Bra009049.1-P	Field mustard	cytosol	73.33	72.64
CDX69853	Canola	cytosol	73.33	72.64
AT5G10230.1	Thale cress	cytosol	72.7	72.47
Solyc04g055170.2.1	Tomato	plastid	72.06	71.84
PGSC0003DMT400004741	Potato	cytosol, mitochondrion	72.06	71.61
KRH18900	Soybean	endoplasmic reticulum	71.75	71.52
AT5G10220.1	Thale cress	cytosol	71.75	71.07
CDX69852	Canola	cytosol	71.11	70.89
Bra009048.1-P	Field mustard	cytosol	71.11	70.89
CDY08828	Canola	cytosol	52.7	70.04
CDX96985	Canola	cytosol	45.4	67.77
EER88097	Sorghum	cytosol	66.35	66.56
GSMUA_Achr8P17240_001	Banana	cytosol	65.71	65.51
TraesCS7D01G181600.1	Wheat	cytosol, golgi, unclear	64.76	64.97
TraesCS7B01G085300.1	Wheat	cytosol	58.1	64.44
HORVU7Hr1G037080.3	Barley	cytosol	63.81	63.81
TraesCS7A01G180100.1	Wheat	cytosol, golgi, unclear	63.49	63.69
GSMUA_Achr9P14750_001	Banana	cytosol	63.81	63.61
EES05513	Sorghum	cytosol	63.17	63.38
GSMUA_Achr10P...	Banana	cytosol	63.49	63.29
Os02t0753800-01	Rice	cytosol, plasma membrane	62.22	62.42
Os06t0221200-01	Rice	plasma membrane, plastid	62.54	62.15
PGSC0003DMT400056154	Potato	cytosol	61.59	61.59
TraesCS6A01G300400.1	Wheat	golgi, unclear	60.32	60.32
KRH54748	Soybean	endoplasmic reticulum	33.65	60.23
Zm00001d037211_P001	Maize	mitochondrion	64.76	60.0
TraesCS6D01G280300.1	Wheat	cytosol, golgi, unclear	59.68	59.68
TraesCS6B01G330100.1	Wheat	cytosol	59.37	59.37
Solyc05g051980.2.1	Tomato	cytosol	64.76	58.79
GSMUA_AchrUn_...	Banana	cytosol	24.44	54.23
GSMUA_AchrUn_...	Banana	cytosol	24.44	54.23
KRH20773	Soybean	nucleus	53.33	53.5
KRH13419	Soybean	nucleus	52.7	52.87
KRH20777	Soybean	nucleus	51.75	52.08
KRH62894	Soybean	cytosol	51.75	51.91
KRH11860	Soybean	cytosol	50.48	50.8
KRH13429	Soybean	cytosol	47.62	50.68
KRH36874	Soybean	cytosol	50.16	50.32
KRH30022	Soybean	endoplasmic reticulum, nucleus	49.52	50.0
KRH20779	Soybean	cytosol, endoplasmic reticulum	46.35	49.66
HORVU6Hr1G074440.1	Barley	mitochondrion	60.63	49.23
Zm00001d018090_P002	Maize	plasma membrane	61.9	47.45
KRH20782	Soybean	cytosol	45.4	44.69
KRH30018	Soybean	cytosol	34.29	44.44
KRH13434	Soybean	cytosol	45.08	44.38
KRH13430	Soybean	mitochondrion	18.1	40.43
KRH49730	Soybean	cytosol	31.11	40.33
KRH41882	Soybean	cytosol	39.05	39.05
KRH48709	Soybean	endoplasmic reticulum, nucleus	38.73	38.49
KRH39009	Soybean	cytosol, endoplasmic reticulum, nucleus	38.73	38.49
KRH60582	Soybean	cytosol	24.44	38.12
KRH13431	Soybean	cytosol, nucleus	36.19	36.31
KRH20781	Soybean	cytosol	35.87	35.99
KRG89259	Soybean	cytosol	32.38	35.17
OQU93149	Sorghum	plastid	26.03	25.39
KRH20641	Soybean	cytosol	28.89	25.14

Protein Annotations

Gene3D:1.10.220.10	EntrezGene:100815639	MapMan:35.1	EMBL:ACUP02004848	InterPro:Annexin	InterPro:AnnexinD_plant
InterPro:Annexin_repeat	InterPro:Annexin_repeat_CS	InterPro:Annexin_sf	EMBL:BT096481	UniProt:C6TFT8	ncoils:Coil
EnsemblPlantsGene:GLYMA_08G136200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005544	GO:GO:0008289
InterPro:IPR037104	EnsemblPlants:KRH43188	ProteinID:KRH43188	ProteinID:KRH43188.1	ProteinID:KRH43189.1	PFAM:PF00191
PRINTS:PR00196	PRINTS:PR01814	ScanProsite:PS00223	PANTHER:PTHR10502	PANTHER:PTHR10502:SF98	SMART:SM00335
SUPFAM:SSF47874	UniParc:UPI0001B16797	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:10408352..10411681

Molecular Weight (calculated)

35619.4 Da

IEP (calculated)

6.389

GRAVY (calculated)

-0.451

Length

315 amino acids

Sequence
(BLAST)

001: MATLKVPAQL PSPLEDSEQL RKAFQGWGTN EGLIISILGH RNAAQRKLIR EAYSTTHGED LLKDLDKELS SDFERAVMVW TLDPSERDAF LANEATKMLT
101: SNNWVILEIA STRSSLDLLK AKQAYQARFK KSLEEDVAYH TKGDIRKLLV PLVSTFRYEG DEVNMTLAKS EAKLLHQKIA EKAYNDEDLI RILSTRSKAQ
201: LTATLNQYNN EFGNAINKDL KTDPKDEYLQ LLRAAIKCLT YPEKYFAKVL RLAINKLGTD EGALTRVVTT RAEVDLQRIA EEYQRRNSIP LDRAIASDTS
301: GDYQSILLAL VGHED

Best Arabidopsis Sequence Match ( AT5G65020.1 )
(BLAST)

001: MASLKVPSNV PLPEDDAEQL HKAFSGWGTN EKLIISILAH RNAAQRSLIR SVYAATYNED LLKALDKELS SDFERAVMLW TLDPPERDAY LAKESTKMFT
101: KNNWVLVEIA CTRPALELIK VKQAYQARYK KSIEEDVAQH TSGDLRKLLL PLVSTFRYEG DDVNMMLARS EAKILHEKVS EKSYSDDDFI RILTTRSKAQ
201: LGATLNHYNN EYGNAINKNL KEESDDNDYM KLLRAVITCL TYPEKHFEKV LRLSINKMGT DEWGLTRVVT TRTEVDMERI KEEYQRRNSI PLDRAIAKDT
301: SGDYEDMLVA LLGHGDA

Arabidopsis Description

ANN2Annexin D2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.