CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39009	Soybean	cytosol, endoplasmic reticulum, nucleus	96.85	96.85
KRH41882	Soybean	cytosol	80.76	81.27
KRH60582	Soybean	cytosol	46.69	73.27
Os09t0394900-01	Rice	plasma membrane	68.45	68.89
TraesCS5B01G201700.2	Wheat	cytosol	67.82	68.25
HORVU5Hr1G060250.1	Barley	cytosol	67.19	67.62
Zm00001d020381_P001	Maize	cytosol, extracellular, mitochondrion	67.19	67.41
Zm00001d005713_P001	Maize	mitochondrion	67.19	67.41
EER96704	Sorghum	cytosol	66.56	66.77
KRH49730	Soybean	cytosol	51.1	66.67
TraesCS3B01G531500.1	Wheat	cytosol, plastid	64.35	64.56
TraesCS3D01G479100.1	Wheat	cytosol, plastid	64.04	64.24
TraesCS5D01G209400.2	Wheat	cytosol	67.19	62.83
KRG89259	Soybean	cytosol	57.41	62.76
HORVU1Hr1G016080.6	Barley	cytosol	61.2	61.2
TraesCS1A01G073900.1	Wheat	cytosol	60.25	60.44
Os08t0425700-01	Rice	cytosol	61.2	60.44
TraesCS1D01G076600.1	Wheat	cytosol	59.94	60.13
Zm00001d050346_P001	Maize	cytosol	58.99	58.99
TraesCS1B01G092400.1	Wheat	cytosol	49.21	58.87
EES13861	Sorghum	cytosol	59.31	58.75
HORVU3Hr1G105860.1	Barley	mitochondrion	63.09	58.14
TraesCS5A01G203000.1	Wheat	cytosol	68.45	56.51
TraesCS3A01G484400.1	Wheat	plastid	63.72	54.16
HORVU1Hr1G015920.1	Barley	cytosol	26.81	49.42
KRH30022	Soybean	endoplasmic reticulum, nucleus	39.12	39.74
KRH62894	Soybean	cytosol	39.12	39.49
KRH20773	Soybean	nucleus	39.12	39.49
KRH13419	Soybean	nucleus	38.49	38.85
KRH43188	Soybean	endoplasmic reticulum	38.49	38.73
KRH59342	Soybean	endoplasmic reticulum	38.49	38.73
KRH13434	Soybean	cytosol	38.49	38.12
KRH20782	Soybean	cytosol	38.17	37.81
KRH11860	Soybean	cytosol	36.59	37.06
KRH20777	Soybean	nucleus	36.59	37.06
KRH20779	Soybean	cytosol, endoplasmic reticulum	33.75	36.39
KRH13430	Soybean	mitochondrion	16.09	36.17
KRH18900	Soybean	endoplasmic reticulum	35.96	36.08
KRH13429	Soybean	cytosol	33.12	35.47
KRH36874	Soybean	cytosol	33.75	34.08
KRH30018	Soybean	cytosol	24.92	32.51
KRH20781	Soybean	cytosol	29.65	29.94
KRH13431	Soybean	cytosol, nucleus	29.02	29.3
KRH54748	Soybean	endoplasmic reticulum	15.77	28.41
KRH20641	Soybean	cytosol	27.76	24.31

Protein Annotations

Gene3D:1.10.220.10	EntrezGene:100820062	MapMan:35.1	EMBL:ACUP02004267	InterPro:Annexin	InterPro:Annexin_repeat
InterPro:Annexin_repeat_CS	InterPro:Annexin_sf	EMBL:BT097146	UniProt:C6THM2	EnsemblPlantsGene:GLYMA_07G106600	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005544	GO:GO:0008289	InterPro:IPR037104	EnsemblPlants:KRH48709
ProteinID:KRH48709	ProteinID:KRH48709.1	PFAM:PF00191	PRINTS:PR00196	ScanProsite:PS00223	PANTHER:PTHR10502
PANTHER:PTHR10502:SF120	SMART:SM00335	SUPFAM:SSF47874	UniParc:UPI0001B16704	:	:

Description

hypothetical protein

Coordinates

chr7:+:10341398..10345631

Molecular Weight (calculated)

35564.5 Da

IEP (calculated)

9.092

GRAVY (calculated)

-0.409

Length

317 amino acids

Sequence
(BLAST)

001: MATLTVPPVP PSPRDDAMQL YRAFKGFGCD TSAVINILAH RDATQRAYIQ QEYRSMYSEE LSKRLASELS GKLETAVLLW LHDPAGRDAT IIRKSLTADN
101: RSIEGATEVI CSHTPSQLQY LKQIYHSMFG VYLEHDIQTN TSPGDHQKLL LAYISTPRHE GPEVNREIAQ KDAKALYKAG EKKLGTDEKT FIHIFSERSA
201: AHLAAVSSYY HDMYGHSLKK AVKNETSGAF EHALLTIIQC AVNPGKYFAK VLRKAMKGLG TDDSTLIRVI VTRTEVDMQY IKAAYLKKHK KTLNDEVHSE
301: TSGHYRTFLL SLLGPNH

Best Arabidopsis Sequence Match ( AT1G68090.1 )
(BLAST)

001: MATMKIPMTV PSPRVDADQL FKAFKGRGCD TSVIINILAH RNATQRALIE QEYETKFSDD LRKRLHSELH GHLKKAVLLW MPEAVERDAS ILKRSLRGAV
101: TDHKAIAEII CTRSGSQLRQ IKQVYSNTFG VKLEEDIESE ASGNHKRVLL AYLNTTRYEG PEIDNASVEN DARTLKSAVA RKHKSDDQTL IQIFTDRSRT
201: HLVAVRSTYR SMYGKELGKA IRDETRGNFE HVLLTILQCA ENSCFYFAKA LRKSMKGLGT DDTALIRIVV TRAEVDMQFI ITEYRKRYKK TLYNAVHSDT
301: TSHYRTFLLS LLGPNV

Arabidopsis Description

ANN5Annexin D5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9X3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.