CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13429	Soybean	cytosol	89.46	94.59
KRH13419	Soybean	nucleus	76.68	76.43
KRH20773	Soybean	nucleus	76.68	76.43
KRH30022	Soybean	endoplasmic reticulum, nucleus	72.84	73.08
KRH62894	Soybean	cytosol	71.25	71.02
KRH20779	Soybean	cytosol, endoplasmic reticulum	63.9	68.03
KRH30018	Soybean	cytosol	51.12	65.84
PGSC0003DMT400042972	Potato	cytosol	28.43	59.33
Solyc10g044690.1.1	Tomato	cytosol	60.06	59.31
PGSC0003DMT400019344	Potato	cytosol	58.47	59.22
Solyc10g047240.1.1	Tomato	cytosol	56.87	55.8
GSMUA_Achr4P00360_001	Banana	cytosol	54.31	55.56
TraesCS2D01G370100.1	Wheat	cytosol	55.59	54.89
TraesCS2B01G391000.1	Wheat	cytosol	53.99	53.31
KRH59342	Soybean	endoplasmic reticulum	52.72	52.38
HORVU2Hr1G090920.1	Barley	cytosol	48.24	52.07
KRH43188	Soybean	endoplasmic reticulum	52.08	51.75
Os01t0497400-00	Rice	cytosol	36.42	51.12
KRH13430	Soybean	mitochondrion	23.0	51.06
GSMUA_Achr8P17430_001	Banana	cytosol	49.84	50.98
TraesCS2A01G373800.1	Wheat	mitochondrion	53.35	50.3
EES00261	Sorghum	cytosol	51.76	49.54
KRH18900	Soybean	endoplasmic reticulum	49.2	48.73
KRH11860	Soybean	cytosol	47.28	47.28
KRH36874	Soybean	cytosol	47.28	47.13
Zm00001d008664_P001	Maize	cytosol	46.96	46.82
Zm00001d039739_P001	Maize	cytosol	51.12	45.98
KRH54748	Soybean	endoplasmic reticulum	25.24	44.89
KRH13434	Soybean	cytosol	41.85	40.94
KRH20782	Soybean	cytosol	41.53	40.62
KRH49730	Soybean	cytosol	29.71	38.27
KRH41882	Soybean	cytosol	37.38	37.14
KRH48709	Soybean	endoplasmic reticulum, nucleus	37.06	36.59
KRH39009	Soybean	cytosol, endoplasmic reticulum, nucleus	37.06	36.59
KRG89259	Soybean	cytosol	32.91	35.52
KRH13431	Soybean	cytosol, nucleus	34.82	34.71
KRH20781	Soybean	cytosol	34.5	34.39
KRH60582	Soybean	cytosol	21.09	32.67
KRH20641	Soybean	cytosol	27.48	23.76

Protein Annotations

Gene3D:1.10.220.10	MapMan:35.1	UniProt:A0A0R0GZF0	EMBL:ACUP02008306	InterPro:Annexin	InterPro:AnnexinD_plant
InterPro:Annexin_repeat	InterPro:Annexin_repeat_CS	InterPro:Annexin_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G199800	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005544	GO:GO:0008289	InterPro:IPR037104	EnsemblPlants:KRH20777
ProteinID:KRH20777	ProteinID:KRH20777.1	PFAM:PF00191	PRINTS:PR00196	PRINTS:PR01814	ScanProsite:PS00223
PANTHER:PTHR10502	PANTHER:PTHR10502:SF172	SMART:SM00335	SUPFAM:SSF47874	UniParc:UPI000189D850	:

Description

hypothetical protein

Coordinates

chr13:+:31353786..31356378

Molecular Weight (calculated)

35767.7 Da

IEP (calculated)

7.370

GRAVY (calculated)

-0.413

Length

313 amino acids

Sequence
(BLAST)

001: MATLIAPSNH SPQEDAEALR KAFEGWGTDE NTVIVILGHR TVYQRQQIRR VYEEIYQEDL VKRLESEIKG DFEKAVYRWI LEPADRDAVL ANVAIKSGKN
101: YNVIVEIATI LSPEELLAVR RAYLNRYKHS LEEDVAAHTS GHLRQLLVGL VTAFRHVGDE INPKLAQSEA EILHDAVKEK KGSYEETIRV LTTRSRTQLV
201: ATFNRYREIH GTSISKKLVD EGSDEFQRAL YTAIRAINDP IKYYEKVVRN AIKKVGTDED ALTRVVVSRA EKDLKIISEV YYKRNSVLLE HAIAKEISGD
301: YKKFLLTLLG KED

Best Arabidopsis Sequence Match ( AT1G35720.1 )
(BLAST)

001: MATLKVSDSV PAPSDDAEQL RTAFEGWGTN EDLIISILAH RSAEQRKVIR QAYHETYGED LLKTLDKELS NDFERAILLW TLEPGERDAL LANEATKRWT
101: SSNQVLMEVA CTRTSTQLLH ARQAYHARYK KSLEEDVAHH TTGDFRKLLV SLVTSYRYEG DEVNMTLAKQ EAKLVHEKIK DKHYNDEDVI RILSTRSKAQ
201: INATFNRYQD DHGEEILKSL EEGDDDDKFL ALLRSTIQCL TRPELYFVDV LRSAINKTGT DEGALTRIVT TRAEIDLKVI GEEYQRRNSI PLEKAITKDT
301: RGDYEKMLVA LLGEDDA

Arabidopsis Description

ANN1Annexin [Source:UniProtKB/TrEMBL;Acc:A0A178WGZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.