Factsheet for Solyc01g087900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g007730.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13780.1	Solyc10g007730.2.1	AT1G06510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017443	Potato	cytosol	98.94	99.47
KRH62924	Soybean	endoplasmic reticulum	87.3	88.71
KRG88982	Soybean	cytosol	85.71	85.26
VIT_13s0064g00020.t01	Wine grape	cytosol	87.83	85.13
Bra008803.1-P	Field mustard	cytosol	71.43	80.84
AT5G13780.1	Thale cress	cytosol	80.42	79.17
Bra023435.1-P	Field mustard	cytosol	80.42	78.35
GSMUA_Achr5P03880_001	Banana	cytosol	69.31	77.06
TraesCS2B01G559300.1	Wheat	cytosol	75.13	73.96
HORVU2Hr1G116570.1	Barley	cytosol	75.13	72.82
HORVU2Hr1G116600.1	Barley	cytosol	75.13	72.82
HORVU2Hr1G116620.1	Barley	endoplasmic reticulum, golgi	75.13	72.82
HORVU2Hr1G116630.1	Barley	cytosol	75.13	72.82
TraesCS2A01G528900.1	Wheat	cytosol	75.13	72.45
TraesCS2D01G531800.1	Wheat	cytosol	75.13	72.45
Os04t0635800-03	Rice	cytosol	75.66	72.22
EES12930	Sorghum	cytosol	75.13	72.08
GSMUA_Achr4P18170_001	Banana	cytosol	81.48	71.96
Zm00001d002156_P001	Maize	extracellular	74.6	71.57
Zm00001d026391_P004	Maize	cytosol	73.55	70.56
KXG27210	Sorghum	cytosol, golgi	61.38	59.79
Solyc06g065230.2.1	Tomato	cytosol	30.16	32.76
TraesCS2B01G156100.1	Wheat	cytosol	28.57	23.68
TraesCS7B01G106100.1	Wheat	cytosol	28.04	23.25
TraesCS6B01G203800.1	Wheat	cytosol	26.98	22.37

Protein Annotations

MapMan:18.2.1.1	Gene3D:3.40.630.30	InterPro:Acyl_CoA_acyltransferase	InterPro:GNAT_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006464	GO:GO:0006475	GO:GO:0008080	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0017198	GO:GO:0018002	GO:GO:0019538	GO:GO:0022626	GO:GO:0031415
GO:GO:1990189	GO:GO:1990190	InterPro:IPR000182	UniProt:K4AYI0	PFAM:PF00583	PFscan:PS51186
PANTHER:PTHR23091	PANTHER:PTHR23091:SF282	SUPFAM:SSF55729	EnsemblPlantsGene:Solyc01g087900.2	EnsemblPlants:Solyc01g087900.2.1	UniParc:UPI000276357C
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:82768183..82771882

Molecular Weight (calculated)

21479.9 Da

IEP (calculated)

7.934

GRAVY (calculated)

-0.459

Length

189 amino acids

Sequence
(BLAST)

001: MVCIRKATID DLLAMQACNL LCLPENYQMK YYFYHILSWP QLLYVAEDYN GKIVGYVLAK MEEETTECHG HITSLAVVRT HRKLGLATKL MTAAQNAMEQ
101: VFGAEYVSLH VRKSNRAAFK LYTETLGYKI HDMEAKYYAD GEDAYDMRKE LKGKKHHQHH HHHHHHGGGC CSGEVKVGPK EGAAETKAA

Best Arabidopsis Sequence Match ( AT5G13780.1 )
(BLAST)

001: MVCIRRATVD DLLAMQACNL MCLPENYQMK YYLYHILSWP QLLYVAEDYN GRIVGYVLAK MEEESNECHG HITSLAVLRT HRKLGLATKL MTAAQAAMEQ
101: VYEAEYVSLH VRRSNRAAFN LYTETLGYKI NDVEAKYYAD GEDAYDMRKN LKGKQNHHHA HGHHHHHGGG CCSGDAKVVE TAQAVDGKAV SK

Arabidopsis Description

NAA10N-terminal acetyltransferase A complex catalytic subunit NAA10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.