Factsheet for Zm00001d002156_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d043764_P005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13780.1	Zm00001d043764_P005	AT1G06510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026391_P004	Maize	cytosol	94.42	94.42
EES12930	Sorghum	cytosol	93.91	93.91
Os04t0635800-03	Rice	cytosol	92.89	92.42
TraesCS2B01G559300.1	Wheat	cytosol	87.82	90.1
TraesCS2D01G531800.1	Wheat	cytosol	88.83	89.29
TraesCS2A01G528900.1	Wheat	cytosol	88.83	89.29
HORVU2Hr1G116570.1	Barley	cytosol	87.82	88.72
HORVU2Hr1G116600.1	Barley	cytosol	87.82	88.72
HORVU2Hr1G116620.1	Barley	endoplasmic reticulum, golgi	87.82	88.72
HORVU2Hr1G116630.1	Barley	cytosol	87.82	88.72
GSMUA_Achr5P03880_001	Banana	cytosol	69.04	80.0
Bra008803.1-P	Field mustard	cytosol	66.5	78.44
Bra023435.1-P	Field mustard	cytosol	76.14	77.32
AT5G13780.1	Thale cress	cytosol	73.6	75.52
VIT_13s0064g00020.t01	Wine grape	cytosol	74.11	74.87
Solyc01g087900.2.1	Tomato	nucleus	71.57	74.6
PGSC0003DMT400017443	Potato	cytosol	71.07	74.47
KXG27210	Sorghum	cytosol, golgi	72.59	73.71
GSMUA_Achr4P18170_001	Banana	cytosol	76.65	70.56
KRH14495	Soybean	extracellular	21.83	64.18
Zm00001d033620_P001	Maize	extracellular	28.93	33.14

Protein Annotations

MapMan:18.2.1.1	Gene3D:3.40.630.30	EntrezGene:541935	EMBL:AF384038	InterPro:Acyl_CoA_acyltransferase	InterPro:GNAT_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0008080	GO:GO:0016740	InterPro:IPR000182	EMBL:KJ728361
ProteinID:ONM13257.1	PFAM:PF00583	PFscan:PS51186	PANTHER:PTHR23091	PANTHER:PTHR23091:SF282	UniProt:Q94F76
SUPFAM:SSF55729	UniParc:UPI00000A9126	EnsemblPlantsGene:Zm00001d002156	EnsemblPlants:Zm00001d002156_P001	EnsemblPlants:Zm00001d002156_T001	SEG:seg

Description

Silencing group B protein

Coordinates

chr2:+:6878316..6881153

Molecular Weight (calculated)

22106.4 Da

IEP (calculated)

7.661

GRAVY (calculated)

-0.443

Length

197 amino acids

Sequence
(BLAST)

001: MVCIRQATID DLLAMQACNL MCLPENYQMK YYLYHMLSWP QLLFVAEDYG GRIVGYVLAK MEEDPSEPCH GHITSLAVLR SHRKLGLATK LMSAAQAAMD
101: QVFGAEYVSL HVRRSNRAAF NLYTSTLGYQ IHDIEAKYYA DGEDAFDMRK PLRQPQPKKH HHHHHHGPGG CCSHDAPTAT TGSSPQSFSS PDKKANT

Best Arabidopsis Sequence Match ( AT5G13780.1 )
(BLAST)

001: MVCIRRATVD DLLAMQACNL MCLPENYQMK YYLYHILSWP QLLYVAEDYN GRIVGYVLAK MEEESNECHG HITSLAVLRT HRKLGLATKL MTAAQAAMEQ
101: VYEAEYVSLH VRRSNRAAFN LYTETLGYKI NDVEAKYYAD GEDAYDMRKN LKGKQNHHHA HGHHHHHGGG CCSGDAKVVE TAQAVDGKAV SK

Arabidopsis Description

NAA10N-terminal acetyltransferase A complex catalytic subunit NAA10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.