Factsheet for PGSC0003DMT400017443

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400054832

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13780.1	PGSC0003DMT400054832	AT1G06510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g087900.2.1	Tomato	nucleus	99.47	98.94
KRH62924	Soybean	endoplasmic reticulum	87.23	88.17
KRG88982	Soybean	cytosol	85.64	84.74
VIT_13s0064g00020.t01	Wine grape	cytosol	87.77	84.62
Bra008803.1-P	Field mustard	cytosol	71.81	80.84
AT5G13780.1	Thale cress	cytosol	80.85	79.17
Bra023435.1-P	Field mustard	cytosol	80.85	78.35
GSMUA_Achr5P03880_001	Banana	cytosol	69.68	77.06
TraesCS2B01G559300.1	Wheat	cytosol	75.53	73.96
HORVU2Hr1G116570.1	Barley	cytosol	75.53	72.82
HORVU2Hr1G116600.1	Barley	cytosol	75.53	72.82
HORVU2Hr1G116620.1	Barley	endoplasmic reticulum, golgi	75.53	72.82
HORVU2Hr1G116630.1	Barley	cytosol	75.53	72.82
TraesCS2A01G528900.1	Wheat	cytosol	75.53	72.45
TraesCS2D01G531800.1	Wheat	cytosol	75.53	72.45
Os04t0635800-03	Rice	cytosol	75.53	71.72
EES12930	Sorghum	cytosol	75.0	71.57
GSMUA_Achr4P18170_001	Banana	cytosol	81.38	71.5
Zm00001d002156_P001	Maize	extracellular	74.47	71.07
Zm00001d026391_P004	Maize	cytosol	73.4	70.05
KXG27210	Sorghum	cytosol, golgi	61.17	59.28
PGSC0003DMT400067067	Potato	cytosol	30.32	32.76
TraesCS2B01G156100.1	Wheat	cytosol	28.72	23.68
TraesCS7B01G106100.1	Wheat	cytosol	28.19	23.25
TraesCS6B01G203800.1	Wheat	cytosol	27.13	22.37

Protein Annotations

EnsemblPlants:PGSC0003DMT400017443	EnsemblPlantsGene:PGSC0003DMG400006777	EntrezGene:102600123	Gene3D:3.40.630.30	GO:GO:0003674	GO:GO:0003824
GO:GO:0008080	GO:GO:0016740	InterPro:Acyl_CoA_acyltransferase	InterPro:GNAT_dom	InterPro:IPR000182	PANTHER:PTHR23091
PANTHER:PTHR23091:SF282	PFAM:PF00583	PFscan:PS51186	PGSC:PGSC0003DMG400006777	RefSeq:XP_006345396.1	SEG:seg
SUPFAM:SSF55729	UniParc:UPI0002964988	UniProt:M1A8Y0	MapMan:18.2.1.1	:	:

Description

Silencing group B protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006777]

Coordinates

chr1:+:64934767..64938517

Molecular Weight (calculated)

21342.7 Da

IEP (calculated)

7.925

GRAVY (calculated)

-0.445

Length

188 amino acids

Sequence
(BLAST)

001: MVCIRKATID DLLAMQACNL LCLPENYQMK YYFYHILSWP QLLYVAEDYN GKIVGYVLAK MEEETTECHG HITSLAVVRT HRKLGLATKL MTAAQNAMEQ
101: VFGAEYVSLH VRKSNRAAFK LYTETLGYKI HDMEAKYYAD GEDAYDMRKE LKGKKHHQHH HHHHHGGGCC SGEVKVGPKE GAAETKAA

Best Arabidopsis Sequence Match ( AT5G13780.1 )
(BLAST)

001: MVCIRRATVD DLLAMQACNL MCLPENYQMK YYLYHILSWP QLLYVAEDYN GRIVGYVLAK MEEESNECHG HITSLAVLRT HRKLGLATKL MTAAQAAMEQ
101: VYEAEYVSLH VRRSNRAAFN LYTETLGYKI NDVEAKYYAD GEDAYDMRKN LKGKQNHHHA HGHHHHHGGG CCSGDAKVVE TAQAVDGKAV SK

Arabidopsis Description

NAA10N-terminal acetyltransferase A complex catalytic subunit NAA10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.