CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14485
KRH73638

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13780.1	KRH14485	AT1G06510.1	21798944
AT5G13780.1	KRH73638	AT1G06510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88982	Soybean	cytosol	97.31	95.26
Solyc01g087900.2.1	Tomato	nucleus	88.71	87.3
PGSC0003DMT400017443	Potato	cytosol	88.17	87.23
VIT_13s0064g00020.t01	Wine grape	cytosol	90.32	86.15
AT5G13780.1	Thale cress	cytosol	86.02	83.33
Bra008803.1-P	Field mustard	cytosol	74.73	83.23
Bra023435.1-P	Field mustard	cytosol	84.41	80.93
KRH14495	Soybean	extracellular	26.88	74.63
KRH67220	Soybean	cytosol, extracellular	11.83	39.29
KRG95544	Soybean	cytosol	11.83	31.88
KRH67218	Soybean	cytosol	19.35	30.77

Protein Annotations

EntrezGene:100810038	MapMan:18.2.1.1	Gene3D:3.40.630.30	EMBL:ACUP02002421	InterPro:Acyl_CoA_acyltransferase	EnsemblPlantsGene:GLYMA_04G142300
InterPro:GNAT_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006464	GO:GO:0006475	GO:GO:0008080
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0017198	GO:GO:0018002
GO:GO:0019538	GO:GO:0022626	GO:GO:0031415	GO:GO:1990189	GO:GO:1990190	UniProt:I1JWF0
InterPro:IPR000182	EnsemblPlants:KRH62924	ProteinID:KRH62924	ProteinID:KRH62924.1	PFAM:PF00583	PFscan:PS51186
PANTHER:PTHR23091	PANTHER:PTHR23091:SF282	SUPFAM:SSF55729	UniParc:UPI000233A085	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:24723349..24724293

Molecular Weight (calculated)

21320.6 Da

IEP (calculated)

8.375

GRAVY (calculated)

-0.518

Length

186 amino acids

Sequence
(BLAST)

001: MVCIRKATVK DLLAMQACNL FCLPENYQMK YYLYHILSWP QLLYVAEDYN GRIVGYVLAK MEEETTDCHG HITSLAVLRT HRKLGLATKL MTAAQNAMEQ
101: VFGAEYVSLH VRKSNRAAFN LYTETLGYKI HDVEAKYYAD GEDAYDMRKQ LKGKQHHHHH HHHHHRHEHG GGCCSGEPKG NVAKAT

Best Arabidopsis Sequence Match ( AT5G13780.1 )
(BLAST)

001: MVCIRRATVD DLLAMQACNL MCLPENYQMK YYLYHILSWP QLLYVAEDYN GRIVGYVLAK MEEESNECHG HITSLAVLRT HRKLGLATKL MTAAQAAMEQ
101: VYEAEYVSLH VRRSNRAAFN LYTETLGYKI NDVEAKYYAD GEDAYDMRKN LKGKQNHHHA HGHHHHHGGG CCSGDAKVVE TAQAVDGKAV SK

Arabidopsis Description

NAA10N-terminal acetyltransferase A complex catalytic subunit NAA10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.