Factsheet for HORVU2Hr1G116620.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 4
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

endoplasmic reticulum: 19759340
golgi: 19759340

gfp PMID: 19759340 doi

M Martinez, I Cambra, L Carrillo, M Diaz-Mendoza, I Diaz

Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid, Campus Montegancedo Universidad Politécnica de Madrid, 28223-Pozuelo de Alarcón, Madrid, Spain.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G065350.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13780.1	HORVU3Hr1G065350.1	AT1G06510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G116570.1	Barley	cytosol	100.0	100.0
HORVU2Hr1G116600.1	Barley	cytosol	100.0	100.0
HORVU2Hr1G116630.1	Barley	cytosol	100.0	100.0
TraesCS2D01G531800.1	Wheat	cytosol	97.95	97.45
TraesCS2A01G528900.1	Wheat	cytosol	97.95	97.45
TraesCS2B01G559300.1	Wheat	cytosol	95.38	96.88
EES12930	Sorghum	cytosol	90.77	89.85
Os04t0635800-03	Rice	cytosol	89.23	87.88
Zm00001d026391_P004	Maize	cytosol	88.72	87.82
Zm00001d002156_P001	Maize	extracellular	88.72	87.82
Bra008803.1-P	Field mustard	cytosol	67.18	78.44
GSMUA_Achr5P03880_001	Banana	cytosol	68.21	78.24
Bra023435.1-P	Field mustard	cytosol	77.44	77.84
PGSC0003DMT400017443	Potato	cytosol	72.82	75.53
AT5G13780.1	Thale cress	cytosol	74.36	75.52
Solyc01g087900.2.1	Tomato	nucleus	72.82	75.13
VIT_13s0064g00020.t01	Wine grape	cytosol	73.85	73.85
KXG27210	Sorghum	cytosol, golgi	71.79	72.16
GSMUA_Achr4P18170_001	Banana	cytosol	77.95	71.03
KRH14495	Soybean	extracellular	21.03	61.19
HORVU4Hr1G005940.1	Barley	cytosol	30.77	29.27

Protein Annotations

EnsemblPlants:HORVU2Hr1G116620.1	EnsemblPlantsGene:HORVU2Hr1G116620	Gene3D:3.40.630.30	GO:GO:0003674	GO:GO:0003824	GO:GO:0008080
GO:GO:0016740	InterPro:Acyl_CoA_acyltransferase	InterPro:GNAT_dom	InterPro:IPR000182	PANTHER:PTHR23091	PANTHER:PTHR23091:SF282
PFAM:PF00583	PFscan:PS51186	SEG:seg	SUPFAM:SSF55729	UniParc:UPI00003D6EAA	UniProt:M0WAP6
MapMan:18.2.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:738479545..738481023

Molecular Weight (calculated)

21801.1 Da

IEP (calculated)

7.384

GRAVY (calculated)

-0.338

Length

195 amino acids

Sequence
(BLAST)

001: MVCIRQATID DLLAMQACNL MCLPENYQMK YYFYHMLSWP QLLFVAEDYG GRIVGYVLAK MEEDPSEPCH GHITSLAVLR SHRKLGLATK LMSAAQAAMD
101: QVFGAEYVSL HVRRSNRAAF NLYTSTLGYQ IHDIEAKYYA DGEDAYDMRK MLRQPVPKKH HHHHHAGGGC CSHDALPAPA GSSPTTASPE KKADS

Best Arabidopsis Sequence Match ( AT5G13780.1 )
(BLAST)

001: MVCIRRATVD DLLAMQACNL MCLPENYQMK YYLYHILSWP QLLYVAEDYN GRIVGYVLAK MEEESNECHG HITSLAVLRT HRKLGLATKL MTAAQAAMEQ
101: VYEAEYVSLH VRRSNRAAFN LYTETLGYKI NDVEAKYYAD GEDAYDMRKN LKGKQNHHHA HGHHHHHGGG CCSGDAKVVE TAQAVDGKAV SK

Arabidopsis Description

NAA10N-terminal acetyltransferase A complex catalytic subunit NAA10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.