Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70720 | Canola | cytosol, plastid | 86.29 | 61.59 |
| CDX78712 | Canola | cytosol, plastid | 84.77 | 60.51 |
| CDY16976 | Canola | cytosol, plastid | 84.77 | 60.51 |
| CDX69417 | Canola | cytosol, plastid | 84.26 | 59.5 |
| VIT_16s0039g01850.t01 | Wine grape | cytosol | 67.01 | 47.48 |
| CDY60786 | Canola | cytosol | 65.48 | 47.25 |
| CDX78796 | Canola | cytosol | 65.99 | 47.1 |
| CDY33485 | Canola | cytosol | 64.47 | 47.04 |
| CDX77702 | Canola | cytosol | 64.47 | 46.86 |
| CDY37158 | Canola | cytosol | 63.45 | 46.82 |
| CDY43620 | Canola | cytosol | 63.45 | 46.82 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 65.48 | 46.57 |
| CDY01478 | Canola | cytosol | 64.97 | 46.21 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 64.97 | 46.21 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 64.97 | 46.21 |
| CDX90452 | Canola | cytosol | 63.96 | 45.32 |
| CDY01290 | Canola | cytosol | 61.42 | 44.98 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 61.93 | 44.69 |
| EES02705 | Sorghum | cytosol | 63.45 | 44.64 |
| CDX93845 | Canola | cytosol | 59.39 | 44.49 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 60.91 | 43.96 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 60.91 | 43.96 |
| Os01t0254900-01 | Rice | plasma membrane | 62.44 | 43.93 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 61.93 | 43.73 |
| Solyc06g072760.2.1 | Tomato | cytosol | 56.35 | 39.22 |
| PGSC0003DMT400069241 | Potato | cytosol | 51.78 | 38.35 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 51.27 | 37.97 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 51.27 | 37.97 |
| Os02t0702800-01 | Rice | cytosol | 51.27 | 37.83 |
| EES05663 | Sorghum | cytosol | 49.75 | 36.57 |
| Zm00001d040286_P003 | Maize | cytosol | 53.3 | 35.12 |
| Zm00001d017756_P001 | Maize | extracellular | 43.15 | 34.27 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 49.75 | 33.56 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 45.18 | 33.09 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 45.18 | 32.13 |
| Zm00001d039536_P001 | Maize | cytosol | 41.62 | 31.18 |
| Zm00001d008333_P003 | Maize | cytosol | 51.27 | 31.08 |
| CDY03181 | Canola | cytosol | 21.83 | 16.48 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | GO:A0A078HL98 | UniProt:A0A078HL98 | EnsemblPlants:CDY38084 |
| ProteinID:CDY38084 | ProteinID:CDY38084.1 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 |
| EnsemblPlantsGene:GSBRNA2T00065351001 | InterPro:IPR000727 | InterPro:IPR001388 | PFAM:PF05739 | PFAM:PF14523 | PRINTS:PR00219 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF138 | SMART:SM00397 | InterPro:SNARE |
| SUPFAM:SSF47661 | InterPro:Synaptobrevin | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI0004EE70FE | SEG:seg | : | : | : | : |
Description
BnaC02g06890DBnaC02g06890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HL98]
Coordinates
chrLK032416:+:35717..37316
Molecular Weight (calculated)
22066.6 Da
IEP (calculated)
4.505
GRAVY (calculated)
0.012
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHVTIEYHS ILGLIDDPIK KIADAKLAKD FQSVLKEFQK AQRLAAEREI TYTPVVTTKD IPTSYNAQEL DIESLRTSTS PQQTRLLQSR QEVVFLDNEI
101: TFNEAIIEER EQGIREIQEQ IGEVNEIFKD LAVLVNDQGV MIDDISSNID NSQAATAQAT AQLRKASKTQ RANSSLTCLL ILIFGIVLLI VIIVVLV
101: TFNEAIIEER EQGIREIQEQ IGEVNEIFKD LAVLVNDQGV MIDDISSNID NSQAATAQAT AQLRKASKTQ RANSSLTCLL ILIFGIVLLI VIIVVLV
001: MVRSNDVKFQ VYDAELTHFD LESNNNLQYS LSLNLSIRNS KSSIGIHYDR FEATVYYMNQ RLGAVPMPLF YLGSKNTMLL RALFEGQTLV LLKGNERKKF
101: EDDQKTGVYR IDVKLSINFR VMVLHLVTWP MKPVVRCHLK IPLALGSSNS TGGHKKMLLI GQLVKDTSAN LREASETDHR RDVAQSKKIA DAKLAKDFEA
201: ALKEFQKAQH ITVERETSYI PFDPKGSFSS SEVDIGYDRS QEQRVLMESR RQEIVLLDNE ISLNEARIEA REQGIQEVKH QISEVMEMFK DLAVMVDHQG
301: TIDDIDEKID NLRSAAAQGK SHLVKASNTQ GSNSSLMCLC WK
101: EDDQKTGVYR IDVKLSINFR VMVLHLVTWP MKPVVRCHLK IPLALGSSNS TGGHKKMLLI GQLVKDTSAN LREASETDHR RDVAQSKKIA DAKLAKDFEA
201: ALKEFQKAQH ITVERETSYI PFDPKGSFSS SEVDIGYDRS QEQRVLMESR RQEIVLLDNE ISLNEARIEA REQGIQEVKH QISEVMEMFK DLAVMVDHQG
301: TIDDIDEKID NLRSAAAQGK SHLVKASNTQ GSNSSLMCLC WK
Arabidopsis Description
SYP24Putative syntaxin-24 [Source:UniProtKB/Swiss-Prot;Acc:Q9C615]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.