Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90452 | Canola | cytosol | 90.25 | 89.93 |
| CDX78796 | Canola | cytosol | 87.73 | 88.04 |
| CDY60786 | Canola | cytosol | 83.75 | 84.98 |
| AT4G17730.2 | Thale cress | cytosol | 75.45 | 79.77 |
| CDY43620 | Canola | cytosol | 76.17 | 79.03 |
| CDY37158 | Canola | cytosol | 75.81 | 78.65 |
| CDY33485 | Canola | cytosol | 75.81 | 77.78 |
| CDX77702 | Canola | cytosol | 75.81 | 77.49 |
| KRH07229 | Soybean | endoplasmic reticulum | 74.37 | 75.46 |
| KRH07476 | Soybean | cytosol | 73.65 | 74.73 |
| KRH74378 | Soybean | cytosol | 73.65 | 74.73 |
| CDY01290 | Canola | cytosol | 72.56 | 74.72 |
| KRH39570 | Soybean | cytosol | 73.29 | 74.36 |
| CDX93845 | Canola | cytosol | 69.68 | 73.38 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 68.23 | 69.23 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 68.95 | 68.95 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 68.95 | 68.95 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 68.59 | 68.59 |
| Os01t0254900-01 | Rice | plasma membrane | 68.59 | 67.86 |
| EES02705 | Sorghum | cytosol | 67.15 | 66.43 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 66.79 | 66.31 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 65.34 | 66.3 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 65.34 | 66.3 |
| CDY38084 | Canola | cytosol | 46.21 | 64.97 |
| CDX70720 | Canola | cytosol, plastid | 64.62 | 64.86 |
| CDY16976 | Canola | cytosol, plastid | 64.62 | 64.86 |
| CDX78712 | Canola | cytosol, plastid | 64.26 | 64.49 |
| CDX69417 | Canola | cytosol, plastid | 64.26 | 63.8 |
| Zm00001d040286_P003 | Maize | cytosol | 60.29 | 55.85 |
| Os02t0702800-01 | Rice | cytosol | 53.79 | 55.81 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 52.35 | 54.51 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 52.35 | 54.51 |
| Zm00001d017756_P001 | Maize | extracellular | 45.85 | 51.21 |
| EES05663 | Sorghum | cytosol | 49.1 | 50.75 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 51.62 | 48.97 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 46.93 | 48.33 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 47.29 | 47.29 |
| Zm00001d008333_P003 | Maize | cytosol | 51.99 | 44.31 |
| Zm00001d039536_P001 | Maize | cytosol | 37.18 | 39.16 |
| CDY03181 | Canola | cytosol | 31.05 | 32.95 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | GO:A0A078EPM7 | EnsemblPlants:CDY01478 | ProteinID:CDY01478 |
| ProteinID:CDY01478.1 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:GSBRNA2T00112484001 | InterPro:IPR000727 | PFAM:PF05739 | PFAM:PF14523 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF135 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI0004EEBA19 | SEG:seg | : | : | : | : |
Description
BnaC07g34680D
Coordinates
chrLK031927:+:40851..42611
Molecular Weight (calculated)
30584.5 Da
IEP (calculated)
6.685
GRAVY (calculated)
-0.310
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLEAGR GRQLASSSNI NGGGGRQDTT QAVASGVFEI NTAVSSFHRL VNTLGTPKDT PELRDKLHKT RLHIGELVKD TSVKLKEASK TDHQRGVDQR
101: KKIVDAKLAK DFQSVLKEFQ KAQRLAAERE TVYAPLFTNP SPPSSYTASE IDVSGDKHQE QRALLVESKR QELVLLDNEI VFNEAIIEER EQGIQEIQQQ
201: IGEVHEIFKD LAVLVHDQGT MIDDIGTHID NSHAATAQGR SHLAKASKTQ RSSSTLMCLL MVIFGIVLLI VIIVLAV
101: KKIVDAKLAK DFQSVLKEFQ KAQRLAAERE TVYAPLFTNP SPPSSYTASE IDVSGDKHQE QRALLVESKR QELVLLDNEI VFNEAIIEER EQGIQEIQQQ
201: IGEVHEIFKD LAVLVHDQGT MIDDIGTHID NSHAATAQGR SHLAKASKTQ RSSSTLMCLL MVIFGIVLLI VIIVLAV
001: MSFQDLEAGR GRSLASSRNI NGGGSRQDTT QDVASGIFQI NTSVSTFHRL VNTLGTPKDT PELREKLHKT RLYIGQLVKD TSAKLKEASE TDHQRGVNQK
101: KKIVDAKLAK DFQAVLKEFQ KAQRLAAERE TVYAPLVHKP SLPSSYTSSE IDVNGDKHPE QRALLVESKR QELVLLDNEI AFNEAVIEER EQGIQEIQQQ
201: IGEVHEIFKD LAVLVHDQGN MIDDIGTHID NSYAATAQGK SHLVRHQRHK DQILLCLISP SS
101: KKIVDAKLAK DFQAVLKEFQ KAQRLAAERE TVYAPLVHKP SLPSSYTSSE IDVNGDKHPE QRALLVESKR QELVLLDNEI AFNEAVIEER EQGIQEIQQQ
201: IGEVHEIFKD LAVLVHDQGN MIDDIGTHID NSYAATAQGK SHLVRHQRHK DQILLCLISP SS
Arabidopsis Description
SYP23AT4G17730 protein [Source:UniProtKB/TrEMBL;Acc:A8MS65]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.