Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| golgi:
25047511
plasma membrane: 27800704 plasma membrane: 28056797 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES02705 | Sorghum | cytosol | 90.71 | 90.71 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 86.79 | 87.73 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 86.79 | 87.73 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 86.43 | 87.36 |
| KRH07476 | Soybean | cytosol | 73.93 | 75.82 |
| KRH07229 | Soybean | endoplasmic reticulum | 73.57 | 75.46 |
| PGSC0003DMT400043211 | Potato | cytosol | 73.57 | 75.46 |
| KRH74378 | Soybean | cytosol | 73.21 | 75.09 |
| Solyc06g062360.2.1 | Tomato | cytosol | 73.21 | 75.09 |
| Solyc08g076540.2.1 | Tomato | nucleus | 73.21 | 75.09 |
| AT5G46860.1 | Thale cress | cytosol | 71.43 | 74.63 |
| PGSC0003DMT400038357 | Potato | cytosol | 72.5 | 74.36 |
| Zm00001d040286_P003 | Maize | cytosol | 79.29 | 74.25 |
| VIT_02s0012g01850.t01 | Wine grape | cytosol | 72.5 | 74.09 |
| Solyc11g066910.1.1 | Tomato | plastid | 72.14 | 73.99 |
| KRH39570 | Soybean | cytosol | 72.14 | 73.99 |
| Bra024989.1-P | Field mustard | cytosol | 71.07 | 73.7 |
| CDY33485 | Canola | cytosol | 71.07 | 73.7 |
| CDX77702 | Canola | cytosol | 71.07 | 73.43 |
| Solyc08g005200.2.1 | Tomato | cytosol | 71.43 | 73.26 |
| Bra022073.1-P | Field mustard | cytosol | 69.64 | 73.03 |
| CDY37158 | Canola | cytosol | 69.64 | 73.03 |
| CDY43620 | Canola | cytosol | 69.29 | 72.66 |
| Bra023256.1-P | Field mustard | cytosol | 67.5 | 71.86 |
| CDY01290 | Canola | cytosol | 68.93 | 71.75 |
| PGSC0003DMT400084469 | Potato | cytosol, golgi, mitochondrion, nucleus | 16.07 | 71.43 |
| CDX93845 | Canola | cytosol | 66.79 | 71.1 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 70.71 | 70.97 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 67.86 | 69.6 |
| CDX78796 | Canola | cytosol | 68.57 | 69.57 |
| VIT_16s0039g01850.t01 | Wine grape | cytosol | 68.57 | 69.06 |
| Bra040178.1-P | Field mustard | cytosol | 67.86 | 68.84 |
| CDY01478 | Canola | cytosol | 67.86 | 68.59 |
| CDY60786 | Canola | cytosol | 66.07 | 67.77 |
| Bra012645.1-P | Field mustard | cytosol | 66.43 | 66.91 |
| CDX90452 | Canola | cytosol | 66.43 | 66.91 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 64.64 | 66.3 |
| AT4G17730.2 | Thale cress | cytosol | 61.43 | 65.65 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 62.14 | 63.74 |
| CDX78712 | Canola | cytosol, plastid | 61.79 | 62.68 |
| Bra006372.1-P | Field mustard | cytosol, plastid | 61.79 | 62.68 |
| CDY38084 | Canola | cytosol | 43.93 | 62.44 |
| CDX70720 | Canola | cytosol, plastid | 61.43 | 62.32 |
| PGSC0003DMT400068230 | Potato | cytosol | 66.79 | 61.72 |
| CDY16976 | Canola | cytosol, plastid | 60.36 | 61.23 |
| Bra008592.1-P | Field mustard | cytosol, plastid | 58.93 | 59.14 |
| CDX69417 | Canola | cytosol, plastid | 58.57 | 58.78 |
| AT5G16830.1 | Thale cress | cytosol, plastid | 57.5 | 57.71 |
| Zm00001d008333_P003 | Maize | cytosol | 66.43 | 57.23 |
| Os02t0702800-01 | Rice | cytosol | 53.93 | 56.55 |
| Solyc06g072760.2.1 | Tomato | cytosol | 53.57 | 53.0 |
| Zm00001d039536_P001 | Maize | cytosol | 48.57 | 51.71 |
| PGSC0003DMT400045973 | Potato | cytosol | 24.64 | 51.49 |
| PGSC0003DMT400069241 | Potato | cytosol | 39.29 | 41.35 |
| AT1G32270.1 | Thale cress | nucleus | 49.29 | 33.17 |
| CDY03181 | Canola | cytosol | 29.64 | 31.8 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | EntrezGene:4327713 | EMBL:AK068204 | ProteinID:BAA84625.1 |
| ProteinID:BAA85200.1 | ProteinID:BAF04534.1 | ProteinID:BAS71384.1 | ProteinID:EAZ11285.1 | GO:GO:0000149 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005768 |
| GO:GO:0005770 | GO:GO:0005794 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006623 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0030140 | GO:GO:0031201 | GO:GO:0045324 | GO:GO:0048278 | GO:GO:0061025 | InterPro:IPR000727 |
| EnsemblPlantsGene:Os01g0254900 | EnsemblPlants:Os01t0254900-01 | PFAM:PF05739 | PFAM:PF14523 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF135 | UniProt:Q9S7H0 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE |
| SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI00000A87F6 |
| RefSeq:XP_015622380.1 | SEG:seg | : | : | : | : |
Description
Similar to Syntaxin 22 (AtSYP22) (AtVAM3). (Os01t0254900-01)
Coordinates
chr1:-:8475504..8479452
Molecular Weight (calculated)
30406.3 Da
IEP (calculated)
6.526
GRAVY (calculated)
-0.190
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLEAGN ARGLPRRGGG GRAGAAAAGA GASQAVASGV FQINTAVSTF QRLVNTLGTP KDTPDLRERI HKTRQHITQL VKDTSEKLKQ ASEADHRVEV
101: SASKKIADAK LAKDFQAVLK EFQKAQRLAV EREAAYAPFI SQAGLPQSYN SSEVNNGADK LAEQRTALLE SRRQELVFLD NEIVFNEAVI EERDQGIQEI
201: QHQITEVNEI FKDLAVLVHD QGQMIDDIDT HIENAVIATT QAKGQLSKAA KTQKSNSSLI CLLLVIFGVV LLIVIIVLAA
101: SASKKIADAK LAKDFQAVLK EFQKAQRLAV EREAAYAPFI SQAGLPQSYN SSEVNNGADK LAEQRTALLE SRRQELVFLD NEIVFNEAVI EERDQGIQEI
201: QHQITEVNEI FKDLAVLVHD QGQMIDDIDT HIENAVIATT QAKGQLSKAA KTQKSNSSLI CLLLVIFGVV LLIVIIVLAA
001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
Arabidopsis Description
SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.